Gene Shewmr4_2222 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2222 
Symbol 
ID4252795 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp2654286 
End bp2655224 
Gene Length939 bp 
Protein Length312 aa 
Translation table11 
GC content47% 
IMG OID638118848 
Productdiguanylate cyclase 
Protein accessionYP_734352 
Protein GI113970559 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0027044 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.320993 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCAAA TAGCCCCACT ACACGCCGAT ACGGACCATA ATCAAGCCAT TGAGACTATC 
CTCAATAGCC TCGATGTGTT GGTCTATGTA TCAGATTTAA ATACCTATGA TTTGCTCTAT
TTAAATAGTT ATGGCGCATC AGTTTGGGGG GATGCGAAAG GAAAAAAGTG CTATCAAGTT
CTGCAATCGG CACAAAACTC CCCTTGCCAA TTTTGCACTA ATCCTAAACT AGTGGACTCG
GATGGAAATC CTACGGGCGT CCATGTATGG GAGTTTCAAA ATACGCAAAA TGGCCGTTGG
TATCAATGTC GAGATCAAGC CATTCATTGG ACTGATGGCC GATTAGTCAG AATTGAAATC
GCCACCGATA TCACCGAACG CAAACAGATG GAGCAAGCAC TAATAGAGGC CAAATCTACG
GCAGAGCGCC TTGCCCATAC CGACGAACTG ACCCAGCTCT ATAATCGCCG GGCTTTTTTC
AATCTCGGTC GTCAAATCGC GCAGCAAGCC CAACAACCGC TGTCGTTTAT TATGTTTGAT
ATTGACCATT TCAAGCGGAT TAACGACCAT TGGGGCCACG CAATCGGTGA TGCGGCGCTT
ATCCATATCG CAAGATTGAC GCAAACTAAA CTGAGTTCGA GTGATATTCT CGCCCGTTTA
GGGGGTGAAG AGTTTGGCCT GATTTTACCC AACACTCACC ATGAGCAAGC ATGGCAAGTT
GCGGAAGCGA TTCGCCATGG GTTTGATACA CAGCCGCTGC ACCTTGATGG ACATAGCATC
CGCTGCACCG CAAGCTTTGG CATATCATCC ATAATCTTAC CAAAAATCAA TCACCTCGAT
GAGGCACAAA CTCTCTTGGA GAGCTTATTC AATAATGCCG ATCAGGCCAT GATGCAAGCT
AAACGCGCAG GTAGGAATCA AGTCTGCCAT GCGGCATAA
 
Protein sequence
MTQIAPLHAD TDHNQAIETI LNSLDVLVYV SDLNTYDLLY LNSYGASVWG DAKGKKCYQV 
LQSAQNSPCQ FCTNPKLVDS DGNPTGVHVW EFQNTQNGRW YQCRDQAIHW TDGRLVRIEI
ATDITERKQM EQALIEAKST AERLAHTDEL TQLYNRRAFF NLGRQIAQQA QQPLSFIMFD
IDHFKRINDH WGHAIGDAAL IHIARLTQTK LSSSDILARL GGEEFGLILP NTHHEQAWQV
AEAIRHGFDT QPLHLDGHSI RCTASFGISS IILPKINHLD EAQTLLESLF NNADQAMMQA
KRAGRNQVCH AA