Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2222 |
Symbol | |
ID | 4252795 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 2654286 |
End bp | 2655224 |
Gene Length | 939 bp |
Protein Length | 312 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638118848 |
Product | diguanylate cyclase |
Protein accession | YP_734352 |
Protein GI | 113970559 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0027044 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.320993 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCAAA TAGCCCCACT ACACGCCGAT ACGGACCATA ATCAAGCCAT TGAGACTATC CTCAATAGCC TCGATGTGTT GGTCTATGTA TCAGATTTAA ATACCTATGA TTTGCTCTAT TTAAATAGTT ATGGCGCATC AGTTTGGGGG GATGCGAAAG GAAAAAAGTG CTATCAAGTT CTGCAATCGG CACAAAACTC CCCTTGCCAA TTTTGCACTA ATCCTAAACT AGTGGACTCG GATGGAAATC CTACGGGCGT CCATGTATGG GAGTTTCAAA ATACGCAAAA TGGCCGTTGG TATCAATGTC GAGATCAAGC CATTCATTGG ACTGATGGCC GATTAGTCAG AATTGAAATC GCCACCGATA TCACCGAACG CAAACAGATG GAGCAAGCAC TAATAGAGGC CAAATCTACG GCAGAGCGCC TTGCCCATAC CGACGAACTG ACCCAGCTCT ATAATCGCCG GGCTTTTTTC AATCTCGGTC GTCAAATCGC GCAGCAAGCC CAACAACCGC TGTCGTTTAT TATGTTTGAT ATTGACCATT TCAAGCGGAT TAACGACCAT TGGGGCCACG CAATCGGTGA TGCGGCGCTT ATCCATATCG CAAGATTGAC GCAAACTAAA CTGAGTTCGA GTGATATTCT CGCCCGTTTA GGGGGTGAAG AGTTTGGCCT GATTTTACCC AACACTCACC ATGAGCAAGC ATGGCAAGTT GCGGAAGCGA TTCGCCATGG GTTTGATACA CAGCCGCTGC ACCTTGATGG ACATAGCATC CGCTGCACCG CAAGCTTTGG CATATCATCC ATAATCTTAC CAAAAATCAA TCACCTCGAT GAGGCACAAA CTCTCTTGGA GAGCTTATTC AATAATGCCG ATCAGGCCAT GATGCAAGCT AAACGCGCAG GTAGGAATCA AGTCTGCCAT GCGGCATAA
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Protein sequence | MTQIAPLHAD TDHNQAIETI LNSLDVLVYV SDLNTYDLLY LNSYGASVWG DAKGKKCYQV LQSAQNSPCQ FCTNPKLVDS DGNPTGVHVW EFQNTQNGRW YQCRDQAIHW TDGRLVRIEI ATDITERKQM EQALIEAKST AERLAHTDEL TQLYNRRAFF NLGRQIAQQA QQPLSFIMFD IDHFKRINDH WGHAIGDAAL IHIARLTQTK LSSSDILARL GGEEFGLILP NTHHEQAWQV AEAIRHGFDT QPLHLDGHSI RCTASFGISS IILPKINHLD EAQTLLESLF NNADQAMMQA KRAGRNQVCH AA
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