| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2177 |
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| Symbol | |
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| ID | 4252750 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 2604802 |
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| End bp | 2606475 |
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| Gene Length | 1674 bp |
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| Protein Length | 557 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638118803 |
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| Product | long-chain-fatty-acid--CoA ligase |
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| Protein accession | YP_734307 |
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| Protein GI | 113970514 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000145714 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGATCAGC CTTGGATTAA TCATTTGCCA AAAGATGTGC CTGCTGAGAT TAATGTGGAT
CAGTATTCAT CACTCGTCGA TATGTTCGAG ACAGCGGTGG CTAAATATGC GGATCAACCA
GCATTTATCA ACATGGGAGC TACGCTAACT TACCGTAAAC TTGAAGAACG CAGCCGCGCG
TTTGCCGCCT ATCTGCAAAA TGAATTAAAG CTACAAAAGG GTGACCGCGT TGCCCTGATG
ATGCCGAATT TGCTGCAATA TCCCATTGCG CTGTTCGGCA TTTTACGTGC GGGCATGGTA
GTGGTTAACG TTAACCCACT TTACACTCCG CGCGAATTAA AGCACCAATT AGTCGACTCG
GGCGCTAAGG CTATTGTTGT GGTATCGAAC TTTGCCCGTA CCTTGGAAGA AGTTGTCGAA
CAGACACCTG TAAAAAGCGT GATTATCACA AGTTTAGGTG ACCAACTCAG TGCGCCAAAA
CGCACCTTAG TTAACTTTGT GGTTAAATAC ATCAAAAAAC TAGTGCCTAA ATACGATCTA
CCCCATGCAC TCTCGATGCG CGAAACCCTC TCAAGAGGGC GCCGTATGCA GTATGTCAAA
CCGGTTATCA CGGGTGATGA CTTAGCCTTT TTGCAATACA CAGGTGGTAC GACTGGGGTG
TCAAAGGGCG CCATGTTGAC CCACAGAAAC GTGGTCGCAA ACGTATTGCA GGCGAATGGG
GCTTACTCCC CGGCACTACG TGATGGCAGT GAGTTTGTGG TCACTGCCTT ACCGCTTTAC
CATATTTTTG CATTAACAGT GAACTGCTTA CTGTTTTTAC ATAAGGGCAG TCAGAACCTG
TTAATCACTA ACCCTCGCGA TATTCCAGGG TTTGTGGCTG AACTCAAGAA ATATCCTTTT
ACCGCGCTGA CGGGCGTCAA CACCCTGTTT AATGCGTTAG TGAACAGTAG CGATTTTGCT
GAACTGGACT TTTCTCGCCT CAAATTATCC ATTGGTGGCG GGATGGCGGT ACAAAAAGCC
GTAGCCGACA AATGGCAGAG CATCACCAAA ACCCGCTTAC TCGAAGGTTA TGGTTTAACC
GAAGCGTCAC CGCTACTCAC ATGCTGCCCC TATAACTTAG ATGGCTACAA CGGTTCTATC
GGGTTCCCGG CACCATCAAC CTTAATTCAA GTACGTGATG ATGCGGGTAA TGTGTTACCG
CAAGGTGAGA CGGGTGAGCT GTTGGGTAAA GGCCCACAAA TCATGAAAGG CTATTGGCAG
CGTCCAGAAG AGACCGCCAA AGTGATTGAT AAAGACGGCT GGCTCGCCAC GGGCGATATC
GGTTATATGG ATGAACAAGG TTTCTTCTAT ATCGTCGATC GTAAGAAAGA CATGATTTTA
GTTTCGGGCT TCAACGTCTT CCCCAATGAA GTCGAAGAAG TGGTTGCTTT GCATCCTAAA
GTCATTGAAG TGGCCGCAGT TGGGGTACCA AATGACGCGA GCGGTGAATT AGTAAAGGTG
TTTGTGGTGG CAAAAGATAA ATCTTTAACC GCTGACGACA TCATTAAGCA TTGCCGCGCG
CATTTAACGG GATATAAAGT ACCGAAGCTG GTAGAATTTA GGGATGAGTT ACCTAAAACC
AACGTGGGTA AGATCTTGCG ACGAGAGCTT CGAGACGAAG TGAAGCGCGC GTAA
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| Protein sequence | MDQPWINHLP KDVPAEINVD QYSSLVDMFE TAVAKYADQP AFINMGATLT YRKLEERSRA
FAAYLQNELK LQKGDRVALM MPNLLQYPIA LFGILRAGMV VVNVNPLYTP RELKHQLVDS
GAKAIVVVSN FARTLEEVVE QTPVKSVIIT SLGDQLSAPK RTLVNFVVKY IKKLVPKYDL
PHALSMRETL SRGRRMQYVK PVITGDDLAF LQYTGGTTGV SKGAMLTHRN VVANVLQANG
AYSPALRDGS EFVVTALPLY HIFALTVNCL LFLHKGSQNL LITNPRDIPG FVAELKKYPF
TALTGVNTLF NALVNSSDFA ELDFSRLKLS IGGGMAVQKA VADKWQSITK TRLLEGYGLT
EASPLLTCCP YNLDGYNGSI GFPAPSTLIQ VRDDAGNVLP QGETGELLGK GPQIMKGYWQ
RPEETAKVID KDGWLATGDI GYMDEQGFFY IVDRKKDMIL VSGFNVFPNE VEEVVALHPK
VIEVAAVGVP NDASGELVKV FVVAKDKSLT ADDIIKHCRA HLTGYKVPKL VEFRDELPKT
NVGKILRREL RDEVKRA
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