| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2176 |
|---|
| Symbol | |
|---|
| ID | 4252749 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 2603622 |
|---|
| End bp | 2604776 |
|---|
| Gene Length | 1155 bp |
|---|
| Protein Length | 384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638118802 |
|---|
| Product | ribonuclease D |
|---|
| Protein accession | YP_734306 |
|---|
| Protein GI | 113970513 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0349] Ribonuclease D |
|---|
| TIGRFAM ID | [TIGR01388] ribonuclease D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000267525 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTTTTTAT GGAATGTGAT TAACCCACAG GAACTGGAGA AGAATTTGTC AGTGTTTCAG
TATGTGAGCG ACGAAGCGAG CCTCAATGCC CTCGTAGCTC AATATCAACA GAGTCCGCTG
CTCGTATTAG ATACCGAGTT TGTGCGCACA CGTACCTATT ACGCTAAGCT TGGCCTTATT
CAAGCCTATG ATGGTAAAAC CTTAGCCTTA ATTGACCCTG TTGCCTTACC CGACCTCAGT
GCATTCTGGT CTTTGCTGGA TAATCCTAAC ATTATCAAAC TAGTGCACTC TTGCAGTGAG
GACTTAGAGG TCTTCGCCCA CTATGGTCAG CGTCAACCAA CGCCCTTATT CGATAGCCAA
ATTGCCGCCT CTTTATGTGG CATGGGCCAT GGCCTGGGTT ATGCCAAGTT AGTGGAAACC
TGTTTAGGTG AAGTGATTGA TAAAGGTGAG TCGCGCACCG ACTGGATGCG CCGCCCTTTG
ACTGAGGCGC AGCTTAGCTA CGCCGCCAAC GATGTGTTGT ATCTGTATCA ACTCTATCCG
CAACTCGCCG ACAAGCTTAA AGCGCAAGAT CGCTTAGGCT GGCTGTATGA AGAAGGTGAG
CGGATGACAG AAGGGCGCTT AGCGCCGCCG GATATGGATA CTGCGTACCT GAGAGTCAAA
AACGCTTTTC AGCTTACCGA GAATCAGCTG GCTTACCTTA AAGTGCTGGC GAAGTGGCGT
TTAGAAAAAG CCTTAGCGCG GGATTTAGCC TTGGGCTTTG TGATAAAAGA TCATGGTTTG
ATTGCTCTTG CGAAGAAACA ACCTAAGAGC ATGAGTGATT TGCTCAAACT GAACGATTTG
ACCGAGCAAG AGAAACGCAT TCACGGTAAA GATATTTTAC GGGTGATGCA GACCGCGGAT
TTAAACAATC CACCAGAATT AGTGGATGTC TTAGCGCTCA AACCAGGTTA CAAATCGGCC
TTTAAGAACA TAAAAACCTG CTTAACTGAA CTGTGCGAGC AGCATGCCAT CCCGATGGAA
ATGCTAGGCT CAAAACGTCA TATTCATGAG TATTTACAAT GGCGTTGGGA TAAGCAGCAG
GGTGAGTTAC CGACGGTCTT GAGTGGTTGG CGCGGACAAA TTGCCGCCGA ATCGTTGGCA
AAGCTTGAAG TTTAA
|
|---|
| Protein sequence | MFLWNVINPQ ELEKNLSVFQ YVSDEASLNA LVAQYQQSPL LVLDTEFVRT RTYYAKLGLI
QAYDGKTLAL IDPVALPDLS AFWSLLDNPN IIKLVHSCSE DLEVFAHYGQ RQPTPLFDSQ
IAASLCGMGH GLGYAKLVET CLGEVIDKGE SRTDWMRRPL TEAQLSYAAN DVLYLYQLYP
QLADKLKAQD RLGWLYEEGE RMTEGRLAPP DMDTAYLRVK NAFQLTENQL AYLKVLAKWR
LEKALARDLA LGFVIKDHGL IALAKKQPKS MSDLLKLNDL TEQEKRIHGK DILRVMQTAD
LNNPPELVDV LALKPGYKSA FKNIKTCLTE LCEQHAIPME MLGSKRHIHE YLQWRWDKQQ
GELPTVLSGW RGQIAAESLA KLEV
|
|---|
| |