Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2163 |
Symbol | |
ID | 4252736 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 2591640 |
End bp | 2592299 |
Gene Length | 660 bp |
Protein Length | 219 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638118789 |
Product | intracellular proteinase inhibitor domain-containing protein |
Protein accession | YP_734293 |
Protein GI | 113970500 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00267184 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.315332 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCTAAAAT ACTCCTCCAA GCCAGTGTCG AGGTCTAAGC CTCGAACAAC GCAGGCCTTA GGTCGTATCC TGCGTCCGTT TGGTGTAGTG CTGGTAGCGG GGCAGCTATT TGGCTGCTTT GCCCCGCAAG CCCAGCCTAA TGTGCCAAAA ACGGATATTC GTACCGAGGC GGCTAAACAA CCTGAACTGT TACAGACCGC CGATTTAGCC GCAAAGCTAC AAGGGATAGA GACAAAATCC AGCTTAAAGG TTGAACAGGT CTCGAGCCAT CAGTCTCAGG CTTTGCTTAC TGGTGAGCTT TCCCTCGATG CTTTTGTGGA TTTTAAACAG CCGCTTAAGG CGACATTAAC TGTTCGTAAT CCCTCGACTC AGGCGGTTGC ACTGCGTTAT CACTCGGGCA TGACTGCCGA TTTGCTACTG ACCACAGTGC AAGGAAAGCG TCTTTGGGCT TGGTCTGACG ATATGATGTT TACTCAAGCC CTGCGTGATA AGCAGTTAGC CGCTGGTGAG GAGTTAGTGG TCAGGTTTGC GATCCCGCCA AAAGCCTTGG CAGGGATCCC AAATGATGGG GCTCATCTTG AAGCGCAATT TGCCGCAAAG GCGCTGGAGA GCGAATTGCC AGCAATGGCG CCCGTCGTGT ACTTGCTCAC CCTTGAGTAA
|
Protein sequence | MLKYSSKPVS RSKPRTTQAL GRILRPFGVV LVAGQLFGCF APQAQPNVPK TDIRTEAAKQ PELLQTADLA AKLQGIETKS SLKVEQVSSH QSQALLTGEL SLDAFVDFKQ PLKATLTVRN PSTQAVALRY HSGMTADLLL TTVQGKRLWA WSDDMMFTQA LRDKQLAAGE ELVVRFAIPP KALAGIPNDG AHLEAQFAAK ALESELPAMA PVVYLLTLE
|
| |