Gene Shewmr4_2157 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2157 
Symbol 
ID4252730 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp2585670 
End bp2586398 
Gene Length729 bp 
Protein Length242 aa 
Translation table11 
GC content47% 
IMG OID638118783 
ProductDNA polymerase III, epsilon subunit 
Protein accessionYP_734287 
Protein GI113970494 
COG category[L] Replication, recombination and repair 
COG ID[COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases 
TIGRFAM ID[TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family
[TIGR01406] DNA polymerase III, epsilon subunit, Proteobacterial 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000679182 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.0877249 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATATTA TCTCAAACGC GAGCCGTCAG GTTATTTTGG ATACTGAAAC CACGGGTATG 
AACCAAGGCA GTGGTGCAGT GTATTTAGGG CACAGAATTA TTGAGATAGG CTGTGTTGAG
GTGATCAACC GCCGTTTAAC GGGACGTTAT TACCATCAAT ATATTAATCC CGGCCAAGCG
ATTGACCCAG AAGCTATTGC GGTTCACGGG ATCACCGATG AGCGCGTCGC CAATGAGCCG
CGATTTCATC AGATAGCGCA GGAGTTTATC GATTTTATCA GTGGCGCAGA AATTGTGGCC
CATAACGCAA ACTTCGACGT GAGCTTTATG GACCATGAGT TTTCACTGCT GCAGCCTTTA
GGGCCAAAGA CGAGTGATAT TTGTGAGATT TTAGACTCCC TCGACATTGC AAAATTTTTG
CATCCAGGGC AAAAGAACAA CTTAGACGCG CTGTGTAAAC GTTATGGCAT AGATAACTCT
CGCCGCCTGT ACCACGGGGC ATTACTCGAC GCCGAGATCC TTGCTGATGT GTATTTGGCG
ATGACGGGCG GGCAGACTAA GTTTAATCTT TCTAACGAAG AAGTCGGCCA AGAGGCCGGT
GGTATTCAAC GCTTTGATCC CACATCACTT AATCTTAAAG TGATCCGCGC ATCTGCCGAT
GAACTCGTTA TGCATGAAGA GCGTCTTGAT TTAGTCGCAA AATCAGGAAA ATGCCTCTGG
AGAGGATAA
 
Protein sequence
MNIISNASRQ VILDTETTGM NQGSGAVYLG HRIIEIGCVE VINRRLTGRY YHQYINPGQA 
IDPEAIAVHG ITDERVANEP RFHQIAQEFI DFISGAEIVA HNANFDVSFM DHEFSLLQPL
GPKTSDICEI LDSLDIAKFL HPGQKNNLDA LCKRYGIDNS RRLYHGALLD AEILADVYLA
MTGGQTKFNL SNEEVGQEAG GIQRFDPTSL NLKVIRASAD ELVMHEERLD LVAKSGKCLW
RG