| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2149 |
|---|
| Symbol | |
|---|
| ID | 4252722 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 2572908 |
|---|
| End bp | 2573792 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638118773 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_734279 |
|---|
| Protein GI | 113970486 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.269804 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.274984 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAAAA TAGAATTACT TGAGAGTTTT ATTGCGATAG CGGAATGCGG CAACTTGTCA
AAAGCGGCAG ATAAAGTCTG TCGCACACAA TCAACCTTGA GTTTACAAGT CAAAAAGCTT
GAAGAGGTCG TTGGACAATC GTTGTTGCTG CGAGACAACA AAGGCGTAGC CTTAACCGAG
GCTGGTTTAA CTCTATTAAA TTACGCCTAT AAAATGATGC AACTCAACTC GCAGGCAATA
CATGAATTAA AAGATTGCCC CAACCGAGAA ATGATTAGAT TAGGGGTGCC TACCGACTAT
ATTGGATGTT ATTTAAACAG TTGTTTATTG GAATTTATCC GAGAATTCAC CTGTATCGAA
CTCGTGATCG ACACTGATGT CAGTGGGAAT CTGTTTAAGC GCCTACAGCA GGGGGAATTT
GATCTCATCG TGGCCACCCA TTGGCAAACA CCAATTAACG GTGAGTTGCT GTTCTCCCGC
CGCTTTCACT GGGTTGCAGC CAAAGGTGGC AACGCACATA AACGCGAGAC GATTCCGATG
GCGCTTTACC CAGAAAACTG CCCGATACGG GCGCAGGTAT TTGCCAACCA TCAACTCAGT
ATGCGGCCAA TTCATGTATT GTTATCGACC CCATCACCAC AGGCCTTATG TTTGGCGGTA
GAGAATGATC TTGTCATTGC GCCCATTGCC GAGTTTCGCA TTAATGAACA GATGCAAATA
TTGGAGCCAC TCGAATATGG CTTACCACCA CTTCCACTCT TTAATGAATC TCTCTATTTA
AATCCAGAAA CGCAAACAGA TGCCACAATT CAACTAATCG CTTTACTCAA AGCAAATGTA
GATCATTTAG AAAATACTGA ATCATGCGTA ATTTCAGTGA GATAA
|
|---|
| Protein sequence | MLKIELLESF IAIAECGNLS KAADKVCRTQ STLSLQVKKL EEVVGQSLLL RDNKGVALTE
AGLTLLNYAY KMMQLNSQAI HELKDCPNRE MIRLGVPTDY IGCYLNSCLL EFIREFTCIE
LVIDTDVSGN LFKRLQQGEF DLIVATHWQT PINGELLFSR RFHWVAAKGG NAHKRETIPM
ALYPENCPIR AQVFANHQLS MRPIHVLLST PSPQALCLAV ENDLVIAPIA EFRINEQMQI
LEPLEYGLPP LPLFNESLYL NPETQTDATI QLIALLKANV DHLENTESCV ISVR
|
|---|
| |