| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2142 |
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| Symbol | def |
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| ID | 4252715 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 2563476 |
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| End bp | 2563967 |
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| Gene Length | 492 bp |
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| Protein Length | 163 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638118766 |
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| Product | peptide deformylase |
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| Protein accession | YP_734272 |
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| Protein GI | 113970479 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
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| TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.644494 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCTGTAC TCGATATTCT GACAATTCCC GATGAGCGTC TAAAGCGCAA AGCACAACCC
GTAAAAGACA TTGAAGCGAT TCAGGGATTT ATCGATGATT TAATCGAAAC CATGTACCAC
ACCGATGATG GTATCGGTCT GGCCTCGACC CAAGTGGGTA GTACAGATGC GGTGATTGTG
ATCGATTTAT CCGAAAATCG CGATCAACCC TTAGTGCTGA TTAATCCAGA GATTGTTGAA
AAGTCAGGCG AATACGTGGG TGAAGAAGGC TGTCTTTCTA TCCCTGGCTA TCGCGCAAAA
GTGAGCCGTT TTGAAAAGGT TAAAGTCACT GCCTTAGATA GACAGGGCAA AGCGATTGAA
ATCGAAACTG ATGACTTTTT AGCCATTGTT TTACAACACG AAATCGACCA TTTACACGGT
AAAGTGTTTA TCGAACATTT ATCGGCATTA AAGCAGCAAA TCGCGTTGAA AAAAGTGCGT
AAATACGCCT AA
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| Protein sequence | MAVLDILTIP DERLKRKAQP VKDIEAIQGF IDDLIETMYH TDDGIGLAST QVGSTDAVIV
IDLSENRDQP LVLINPEIVE KSGEYVGEEG CLSIPGYRAK VSRFEKVKVT ALDRQGKAIE
IETDDFLAIV LQHEIDHLHG KVFIEHLSAL KQQIALKKVR KYA
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