| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2135 |
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| Symbol | |
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| ID | 4252708 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 2553059 |
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| End bp | 2555056 |
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| Gene Length | 1998 bp |
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| Protein Length | 665 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638118759 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_734265 |
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| Protein GI | 113970472 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.269478 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATACGTC ACAGTCTACT CTTCGCCCTT GTGTTAACCG CCTCTTCTCC CTTATCTATT
TCGGCGCAGA CCAACAATAG CCCCGTCAGC AGTACAGCAT CTTTTCATCT TGAGCCGCTC
TCTTGGTGGG CGGGCATGCA TAATCCAAAG TTGCAACTGA TGCTCCACAG CAATGCACTG
CCCGCGGATG CGACGCAACT TAAGGTTGAG ATTACTGGCC AAGATGTGGT GTTTGAAGGA
ATAGAGCAGA CGGATAATCC CCATTATTTG TTCATCAATT TAGATTTGCG CCAAGCCAAG
CCGCAGACCT TTGATATCCG CATTCTCGCT GGCGACAAGC AGCTCTTCAA ACTGCCCTAC
ACTTTAGCTG CGCGGGCAGA TGGCAGCCGC GAACGCCAAG GCTTTAGTAA TAAAGATGTG
ATTTACCTTA TCACCCCAGA CCGATTCGCC AATGGCAACC CAAACAATGA CAATCAAGCC
GATATGCTCG AGCATGCGGC GCCTGATAAT TCCGATGGCC GCCATGGCGG CGATATCGAA
GGTATACGCC AGCACTTAGA TTACTTAGCC AAATTAGGTG TCACTCAGCT ATGGATTAAC
CCACTGCTTG AAAATAACCA AGCCCAATAC TCCTACCATG GTTACGCCAT TACCAATCTG
TATCGGGTCG ACCCGCGTTT TGGCAGCAAT CAGGATTACC AAAAGTTAGT CACAGAGGCC
AAACAGCATG GTCTTGGGGT GATTAAAGAC GTAGTACTTA ACCATATTGG CTCAAACCAT
TGGTGGTTAA AGGATTTACC GAGCAGTGAC TGGCTCAATT ACCCACAGCA GCCCAATGTC
ACTGATGCTA ATACGGCTCC AGCCGCCAGT TTTACCAGCC CTAGTTTTAC GAGCCCGAGC
TTTACCAGTC ATAGACGCAC CACAGTGCAA GATCCCTACG CCGACACACA AGATAAAAGT
GACTTTGTCG ACGGTTGGTT TGTCGATTCG ATGCCCGATC TCAATCAGCG CAACCCAAAA
GTTGCGACTT ATCTTATTCA AAACAGCATT TGGTGGGTGG AATACGCGGG GCTTTCGGGC
ATTCGCGAAG ACACCTATTC CTACGCCGAT AAAACCTTTT TAGCCCAATG GTCAAAGGCC
TTAATGGCCG AATACCCACA TTTTAATATT GTCGGTGAAG AGTGGACCGC CAATCCCATT
ACCGTCTCCT ATTGGCAAAA AGGCAAAATC AATGCCGATG GCTATCGCTC GGATTTACCT
AGCCTGATGG ACTTTCCACT CAATGAAAAG CTGGTTGAAA GCCTGAACGA GCCCGAAGGC
TGGGATACTG GTTTTATCAA GCTTTACGAG ATGTTAGCGA ATGATGTGGT GTATGCTAAT
CCAAGTCAGT TAGTCCTCTT TGAAGGCAAC CACGACACCA ATCGGATTTA TAGTCTGCTT
AAAGAAAACC TGCCGCTGTA CCAAATGGCC CTCACCTATG TGTTAACGGC AAAACGCATT
CCACAGCTGT TTTACGGCAC AGAAGTATTA ATGACCAGCC CAACCGAAGG CCGCCACGAC
GGTGTCGTGC GTAGCGATTT TCCGGGTGGC TTTGCTAATA GCAAAGTCAA CGGTTTTAGC
GGTAAAGGGC TTAACGTAAA ACAGCAGCAA GCGCTTGCGT TTGTGCGCAC CCTACTTAAT
TACCGTAAAC ATTCAGCCGC GCTGCAAACG GGCGATTTAC TGCACTTTGT GCCACAAAAC
GGCATTTATG TGCTATTTCG ATGCGCGGCA AAACGTCCCG CAGCGGGCAA TGCCTGCTAC
CAAGCCGATG CGGATAAAGT GATGGTGATT TACAACAAGA ATGACCAAAC ACAAACGCTG
GATTTAAGCC GCTTTAACAA GGTATTGGCG GGAAATACCT CGGCGAACTC AGTCTTCACA
GGTGATAAGT TCAAGCTTAA TCAATCAGTT ACTCTGCCCC ATGCTGGCGT TATGCTGCTT
GAACTCAATC ATCAATAA
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| Protein sequence | MIRHSLLFAL VLTASSPLSI SAQTNNSPVS STASFHLEPL SWWAGMHNPK LQLMLHSNAL
PADATQLKVE ITGQDVVFEG IEQTDNPHYL FINLDLRQAK PQTFDIRILA GDKQLFKLPY
TLAARADGSR ERQGFSNKDV IYLITPDRFA NGNPNNDNQA DMLEHAAPDN SDGRHGGDIE
GIRQHLDYLA KLGVTQLWIN PLLENNQAQY SYHGYAITNL YRVDPRFGSN QDYQKLVTEA
KQHGLGVIKD VVLNHIGSNH WWLKDLPSSD WLNYPQQPNV TDANTAPAAS FTSPSFTSPS
FTSHRRTTVQ DPYADTQDKS DFVDGWFVDS MPDLNQRNPK VATYLIQNSI WWVEYAGLSG
IREDTYSYAD KTFLAQWSKA LMAEYPHFNI VGEEWTANPI TVSYWQKGKI NADGYRSDLP
SLMDFPLNEK LVESLNEPEG WDTGFIKLYE MLANDVVYAN PSQLVLFEGN HDTNRIYSLL
KENLPLYQMA LTYVLTAKRI PQLFYGTEVL MTSPTEGRHD GVVRSDFPGG FANSKVNGFS
GKGLNVKQQQ ALAFVRTLLN YRKHSAALQT GDLLHFVPQN GIYVLFRCAA KRPAAGNACY
QADADKVMVI YNKNDQTQTL DLSRFNKVLA GNTSANSVFT GDKFKLNQSV TLPHAGVMLL
ELNHQ
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