| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2134 |
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| Symbol | |
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| ID | 4252707 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 2550110 |
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| End bp | 2552929 |
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| Gene Length | 2820 bp |
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| Protein Length | 939 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638118758 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_734264 |
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| Protein GI | 113970471 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.13023 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGCGAT TTAAACCCAG CTTGCTGACC TTAGCACTCG TTGCTGCAGG CGCCAGTATG
CACTCCTACG CAGCAGATGA TGTAAAAGAA AAAGACCTAA AAGCCAAAGA TGCCGAAATT
GAAGTAATCC AAGTTAAAGG CTTCAGAACC AGTGTGATCA AATCGCTTAA TGAAAAACGT
TTTGGCGATA CCGTATCTGA ATCTATCTCT GCCGACGACC TCGGCGCCCT GCCCGACCAA
TCTATCGCCG ATGCGTTAAC CCGTTTACCA GGCGTCACCG CTGTTCGTAC TGGCGGCCAA
GCCAGTGGTT TGAACATCCG TGGTCTGGAT GGCGATTTCG TGTTTGCAAC CCTCAATGGC
CACGAACAGG TGACCACTGG TGGTAAACGT GCCATTGAGT TTGACCAATA TCCATCCGAA
TTAATTAGTC AGGCAGCGGT TTACAAAACA CCTAAAGCCT CACTGATCGA AGGCGGCGTG
GCCGGTACGG TTGAATTAAA AACCGCCGAT CCGCTGAAGA ATGACAAAGA TCAATCATTC
AATATCAATG CCCGTGGCAG CTTTAACGAT CGCGCCGATG AAATCTCCGA TGCAGAGCAA
TACGGCAATC GTTTAAGTCT CGCTTATCAA GGTAAATTCC TCGAAGACAC CTTAGGGGTG
GCAGTGGGCT ATGCTCACCT GTATCAACCT TATGTTGCAA GCCAATTCAT TGGGTTACGT
TTTAATGATG ATAAAAAAGA CGTTAACGGT GACGGTGTAA CCGAAGCGAT TAGTGAAGGT
TTTGAACTGC AACAAAAAGG CGGCGACGAT ACCCGTGATG GCTATATGGC TGCTATCCAT
TGGCAACCGA GTGACAGCCT GAGTGTGAAG GGCGATCTGT TCCACTCTAA ATTTACCTCT
GAAAACTTTG CCCGTGGTTT CCGCGTCAAG TCATTGAAAA ATGGTACTAT CAGTGATGCC
GTTGTCGAAA ACGGTTCTAT GACGGGTGGT ACAGTCTCTA CTGATGGCAC GGATAACTTT
GCGGTTTTCG TGATCAACGA TAACGACTCA AAATACTCAG AATTGACTTC AGGCTCTTTG
AACCTTGAGT GGAATAACGG TGGCGCACTG ACAGTGGCGG CCGATGTCAG CTATTCCAAA
GCCGATGGTG AATTCGTTAA CGGCGGTACT CGCGCCGTGT TGTACGATGA TCTGGGCAAT
GAAGTTCGTT CAGCTGAGTC TGTTACTTAT CAACTGAATG GCTTAAATCC TGCGGATGTC
AGCTTTGCTA ACGACTACAC CAATACCTCG ACCCTAGGTC TGAAAGAAGT GGGTATGTGG
CCCTATAATC AGCAAAACGA TCTGATTGCC TACAAACTCG ATTTTAACTA TGTCTTAGAC
ACCAGCTTTG TCTCTTCTGT TGATTTTGGT GTGCGTTATG CTGAACGTGA ATTCAACGCA
CAGCGTTCAC AGGCAGGTTA CGGTTTCGAG TTTGGTAAAA ACCCTGATAA TCAACCAGTC
CTAGCACTGA ACGGCGATAT GGCCAAAGTG GTTGATTTTG GTGGTGAATT AGCAGGTTAC
CCAAGTTTCC TCGCCATTGA CTTTAACAAA GCCATTGAAC TGGTGAACGC ACAACTGGCG
GCAACTGGCC AATCACCTTT CACTCCAACG GCGAACTGGT CAAATAACTG GACCATGATC
CAAAGCGGCG CGGTCAATGA AGATGTATTA GCCGGTTACG TGCAGGCAAA CTTAGACTTC
GATATCGGCG ATGTTAAAGT CACAGGTAAC TTAGGTGTAC GTGTCGTACA CACAGATCAA
AGCAGTACTG GTCTGCAACA AGTTGGTTAT GGTTTAGGTG AAGCCATTAC CGATGAGCAA
GGCGTCGTAA GCACGGATTA TATCCGTAAC AAGGTCGGCA AAACCTATAC CGACTACTTA
CCGTCACTGA ACTTAACCTT CCACCTGACT GAAAACGATC AACTGCGTTT TGCAGCGGCC
TCTGTGATGT CACGCCCACC AATCGACAAG TTAAAGTCAG GTATGGGTTC TTGGTATGAC
GACTCTGCTA CGCCTGGATA CAAAAAGTAC AATGCGTGGG GTAACACCAG TCCGTTATTA
GATCCTTTCT ATGCGGATCA ATATGACTTG TCCTACGAGC ACTACTTTGA AGAGTCTGAA
GGTGCGGTCG TTGTGGCCTT GTTCTATAAA GATATTAAAT CTTTCATCAA CAACTTCACT
ATTCAACCAT TTGATTTTGA AGCGAATGGC TTTATCGTGC CCGATACCAT TATCGACAAT
GGCGTTGAGT TCCCAGTTGT TAAAGATGAA GGCCAATATC AAACAGCCAT CAACAACGAT
AAAGGCGGTT ATATCCGTGG TATCGAGTTA GGCTATACCC AAGTGTTTGA TTTCCTACCG
TCACCTTTAG ATGGTTTAGG TTTCACTGGT AGCTATTCCT ATTCAGACAG TGAAGTGGAA
TTCACTACAG ACTTAAGCGG TTCTAACCTG ACCATTCCAT TACCAGGTCT GTCAGAAAAC
GTGCTGAACA CTACCCTGTT CTACACCTTG GATGGTTTCG ATACCCGTGT GAGCATGAGA
TACCGTAGTA GTTATGTGTC AGAGCAAGTT GCGGTTGAAT CTCAACTGGC GTTCTTTGAT
GCAGAAACGA TTGTGGATTA TCAGGCTTCT TATGCGCTGG ACAACGGACT TAAGTTCCTG
TTCCAAATCA ATAACCTCAC CGATGAGCCT AATAAAACTT ACTTTGGTGA AGAGCATCAA
ACCGGAACAA TTCAATACTT CGGTAGACAA TATTTCCTTG GTTTAACCTA CTCTCTGTAA
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| Protein sequence | MMRFKPSLLT LALVAAGASM HSYAADDVKE KDLKAKDAEI EVIQVKGFRT SVIKSLNEKR
FGDTVSESIS ADDLGALPDQ SIADALTRLP GVTAVRTGGQ ASGLNIRGLD GDFVFATLNG
HEQVTTGGKR AIEFDQYPSE LISQAAVYKT PKASLIEGGV AGTVELKTAD PLKNDKDQSF
NINARGSFND RADEISDAEQ YGNRLSLAYQ GKFLEDTLGV AVGYAHLYQP YVASQFIGLR
FNDDKKDVNG DGVTEAISEG FELQQKGGDD TRDGYMAAIH WQPSDSLSVK GDLFHSKFTS
ENFARGFRVK SLKNGTISDA VVENGSMTGG TVSTDGTDNF AVFVINDNDS KYSELTSGSL
NLEWNNGGAL TVAADVSYSK ADGEFVNGGT RAVLYDDLGN EVRSAESVTY QLNGLNPADV
SFANDYTNTS TLGLKEVGMW PYNQQNDLIA YKLDFNYVLD TSFVSSVDFG VRYAEREFNA
QRSQAGYGFE FGKNPDNQPV LALNGDMAKV VDFGGELAGY PSFLAIDFNK AIELVNAQLA
ATGQSPFTPT ANWSNNWTMI QSGAVNEDVL AGYVQANLDF DIGDVKVTGN LGVRVVHTDQ
SSTGLQQVGY GLGEAITDEQ GVVSTDYIRN KVGKTYTDYL PSLNLTFHLT ENDQLRFAAA
SVMSRPPIDK LKSGMGSWYD DSATPGYKKY NAWGNTSPLL DPFYADQYDL SYEHYFEESE
GAVVVALFYK DIKSFINNFT IQPFDFEANG FIVPDTIIDN GVEFPVVKDE GQYQTAINND
KGGYIRGIEL GYTQVFDFLP SPLDGLGFTG SYSYSDSEVE FTTDLSGSNL TIPLPGLSEN
VLNTTLFYTL DGFDTRVSMR YRSSYVSEQV AVESQLAFFD AETIVDYQAS YALDNGLKFL
FQINNLTDEP NKTYFGEEHQ TGTIQYFGRQ YFLGLTYSL
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