| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2133 |
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| Symbol | |
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| ID | 4252706 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 2547989 |
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| End bp | 2549611 |
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| Gene Length | 1623 bp |
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| Protein Length | 540 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638118757 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_734263 |
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| Protein GI | 113970470 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGAGT TAACTTGGTG GCGTGGAGCC GTGATCTATC AAATTTATCC ACGTAGCCTT
TTGGATACTA ATGGTGATGG CGTTGGCGAT CTGCGCGGTA TTATCACCAA GTTGGACTAT
ATTGCCAGCC TGAATGTGGA TGCCATTTGG ATTTCGCCGT TCTTTAAATC CCCAATGGCT
GACTTTGGTT ACGATATCAG TGACTATCGG GAGGTGGATC CACTATTTGG TTCGATGCAG
GATTTCGATG AGCTGATCGA AAAAGCCCAT CAACGTGGCA TTAAAGTCAT TATTGACCAA
GTGCTAAGCC ATACCTCAGA TCAGCATGCT TGGTTTTGTG AGAGCCGCGA GAGCCGCACC
AATCCCAAGG CCGATTGGTA TGTGTGGGCC GATCCTAAGG AAGATGGGAC GGCGCCAAAC
AACTGGTTGG CGATTTTCGG CGGTTGCGCC TGGGAGTGGG AACCGCGCAG ACAACAATAT
TATCTGCACA ACTTTTTACG CAGTCAGCCC GATATTAACT TCCATAATCC CGATGTGCGT
CAAGCCGTGT TAGAGAATGT GGAGTTTTGG TTGAAGAAGG GCGTCGATGG TTTCCGCCTA
GATGCTATTA CCTTCTGTTA TCACGATGAG CAGCTTCGGG ATAATCCGGC AAAACCTAAG
GATAAGCGCC AGGGGCGTGG GTTCAGTGAA GATAATCCCT ATGCCTATCA GTACCATTAC
TACAATAATG ATCGCCCGCA AACGATTCTA TTTATTGAAG AATTACGCCA ACTGATCAAT
CGCTATCCGG GTGCAGTGAC TTTAGGCGAA GTCTCCGCTG AGGATTCTCT CGCGGTGATG
GCTGCCTATA CCAAGGGTGA AGACCGCTTA CATATGGCCT ACAGTTTTGA GCTGCTGACC
GATGACTATA GCGCCGCTTA TATTCGCCAA ACCGTCGAAG CACTGGAAGC CAGTATTGGT
GATGGTTGGC CTTGTTGGGC GATTGGTAAC CACGATGTGC AGCGCGTCGC CAGCCGTTGG
GGACGGGGCA AGCAAACCCA CGACATGGTG AAAATGCTTA ATGCCATGCT CAGCTCACTT
CGCGGCCGTG TCTGTAGTTA CCAAGGAGAA GAGCTTGGCT TAACCGAGGC GCCAATTGAA
TACCATGAAT TGCAGGATCC CTTCGGTAAA ACTTTCTGGC CAATGTTTAA GGGCCGTGAT
GGTTGCCGCA CTCCGATGCC GTGGGAACAA CACGCCGATT TTAGCGGCTT TAGCCAAGTG
ACACCTTGGT TGCCTGTGGC GAATGCACAC AGGGCATTGG CGGTCGATGT GCAGGAAGCC
GATCCCGCTT CAATGTTGCA GGGCTATCGT CAGTTCCTCG CGTGGCGCAA AGGCTATCCT
ATTTTAATCG AAGGGGAGAT TGAGTTCCTC GACGCGCCAG AACCCTTATT GGTGTTTGTG
CGAACACTGG GTGAGCAGAA ACTCCTTGTG TGTTTCAATC TATTAGACAC AGAAACCCAG
TGGGTGCTGG ATAAGCTCAG CATACAACAA GAATTGACCG GGCATGGCTT GAAAACTGCG
CAAAGGGTCG CTGACACATT GACATTCTCG GCCTATGCCT GCTTTTATGC GCTGTTGAAC
TAG
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| Protein sequence | MSELTWWRGA VIYQIYPRSL LDTNGDGVGD LRGIITKLDY IASLNVDAIW ISPFFKSPMA
DFGYDISDYR EVDPLFGSMQ DFDELIEKAH QRGIKVIIDQ VLSHTSDQHA WFCESRESRT
NPKADWYVWA DPKEDGTAPN NWLAIFGGCA WEWEPRRQQY YLHNFLRSQP DINFHNPDVR
QAVLENVEFW LKKGVDGFRL DAITFCYHDE QLRDNPAKPK DKRQGRGFSE DNPYAYQYHY
YNNDRPQTIL FIEELRQLIN RYPGAVTLGE VSAEDSLAVM AAYTKGEDRL HMAYSFELLT
DDYSAAYIRQ TVEALEASIG DGWPCWAIGN HDVQRVASRW GRGKQTHDMV KMLNAMLSSL
RGRVCSYQGE ELGLTEAPIE YHELQDPFGK TFWPMFKGRD GCRTPMPWEQ HADFSGFSQV
TPWLPVANAH RALAVDVQEA DPASMLQGYR QFLAWRKGYP ILIEGEIEFL DAPEPLLVFV
RTLGEQKLLV CFNLLDTETQ WVLDKLSIQQ ELTGHGLKTA QRVADTLTFS AYACFYALLN
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