| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2130 |
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| Symbol | |
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| ID | 4252703 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 2542816 |
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| End bp | 2545074 |
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| Gene Length | 2259 bp |
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| Protein Length | 752 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638118754 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_734260 |
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| Protein GI | 113970467 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0061806 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGAAG GAATTCAGGT TACTGGCAGT ATCGGCGATA AAAATACTCA TTTTAATCAA
AGCGTAAGCC TAGAATGCTA TAGCGGCATT CTCTCTATGC TGCTTAATGG CGCGCCATTA
GCAGAAATTC TCCATGCTTT AGTGTTAAAA ATCGAAGATC AGCGTTTAGG TACGCACGCC
TCCGTGTTGT TGCTCAGTGA AGATGGTAAA AAGCTACTCA CGGGCGCCGC GCCACATTTA
CCCGACAGTT ATAACCAAGC TATCCATGGA GTCGAAATTG GCCCAGAGGT CGGTTCCTGT
GGTACTGCGG CTTATACGGG GGAGCGTGTG ATAGTCGAAG ATATCGAGCA TCATCCCTAT
TGGGCCTTGT ATCAATCCTT TGCGCTAGCC CATGGGCTGA GAGCCTGTTG GTCTGAACCT
ATCAAAGATA GTCAAGGCAA GGTGTTAGGT ACTTTTGCCA TGTACTATGA GGAGGTTAAA
TCGCCAACGA CTGCAGATTT AACCTTGATA GCCGAGGCGG CGAGACTGGC GAGTTTAGCC
ATAGAACGCA GTCGCTCGCT CGAGTTTCAG CGTCTTGCGG TGAAAATATT TGATCGCCTA
CCTCTGTCGT TAGTCATCAC CAATGCCAGC CATTCCGTGC TCTATGCTAA CGATGCTTTT
ACCCAGATGG TTTATCCTGA AACCACTGAT ATTGATGATT TTTGCCCCGA ACACTTTTTC
TCTCCCTCTG AACCCCACGA AATCGATTCC CTGTTTCAAC ATCTGTCTGA GGGCAAAATG
TGGCAGGGTG AGTTGATTGG CCTACGTAAT AACGGTGAGA CCTTTTACCT CGATTTAACC
GTAACAGTGT TTCGCGAATC CCATAGTAAC GAAAACGGTT TTGCTTGGTT ATTTTCCGAT
ATCAGTGAGC GTAAAAAAGC GGCGCAGTTA ATCAAGTATC AAGCCAATAA CGATTCCCTC
ACTGGGCTTG CCAACCGTAA TGCCTTGTTT CGACAAATCC AAGAGCTGAT CTCCGCCGAC
AGCTTAACAC CCGGCTTTAG CTTTATGCTG ATGGATTTAG ATAACTTTAA ACAAGTGAAC
GATACCTACG GCCACGATAA AGGGGATGCG CTGCTGGTGC AGGTGGTGGA GGAGATTAAA
ACCTGCCTAA ATGATCAAGC GGTATTCTCA CGCCTTGGGG GTGATGAGTT TGCCTTGCTC
CTCCCTGGCA TTGTGACGCA GCGGGAGTTG TCACAACTGG CTGAAAAAAT TAATAGACAG
GTTTATCGGC GTTATGAGCT GTCCCTGGAT AAGGGGGTAT ACAGTTCTGT GAGTATTGGG
ATTGCCCGCT TTCCCGAAGA TGCGCTGGAT TTAGAGCAAC TGTTAAACTG CGCCGATCAG
GCCATGTATA TCTCCAAGGC GAATGGCCGT AATCGTTATC ATTTTTTCAC CGAACAAATG
CAGTTAAACG CCGAGCGCAC GGCGAATTTG CATACATTAC TGAAACAAGC TTTAGAGCAA
GAGGCTTTCG AACTGTATTT TCAGCCTATA GTCGATGCGA CAACTGGACT TGTGCTGCGC
GCTGAAGTGC TACTACGTTG GCAGCACGAG GGGCAGTTTA TTTCCCCCGA TGAATTTATC
CCCATCGCCG AAAACAGCGG TTTGATCGTT AACATTGGCC GCTATGTACG CAAAGCTGTG
ATGCAAACCA TTATTGACAT GCAAGCATTG GGCTGGCCAA TCAATTTAGC GGTCAACGTG
TCGACCTTTG AGTTTTGGTC CCATGAGTTA CAGGATGAAT TTTGTGACTC TTTTGCCGAT
ATTATCGAAG AGTTGGGCTT GATTGAGTTT CCCTACGAGC TTATCACCTT AGAAATCACC
GAATCGCTGT TGATGAAACA GCATGTGCAT TTAATCAAAG TACTGAATGA GTTACGCGGT
CGTGGCATTA AAATCTCCCT CGACGACTTT GGTACCGGTT ATTCTTCTTT GTCCTATTTA
GCGAATTTCC CGATAGATCA AATCAAAATC GATAAGAGCT TTATCGATAG ATTGGATGAA
GGTGAGCGCC ACCTTGCCTT GGTTGAGGCG ATAGTGCGCT TAAGTCATGC GCTGAATTTG
AGTGTGACGG CAGAAGGGGT GGAAACCGAA GCGCAGCTAA AGGTGATGAT GGAAAACCAT
ATTCAAGAAA TTCAAGGCTA TATCTTTTAT AAGCCCATGC CCAAGGCGGC ATTTTTTGAG
TTACTTGCCG AGCAAGCTGC GGCCCATCAC CATTCATGA
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| Protein sequence | MDEGIQVTGS IGDKNTHFNQ SVSLECYSGI LSMLLNGAPL AEILHALVLK IEDQRLGTHA
SVLLLSEDGK KLLTGAAPHL PDSYNQAIHG VEIGPEVGSC GTAAYTGERV IVEDIEHHPY
WALYQSFALA HGLRACWSEP IKDSQGKVLG TFAMYYEEVK SPTTADLTLI AEAARLASLA
IERSRSLEFQ RLAVKIFDRL PLSLVITNAS HSVLYANDAF TQMVYPETTD IDDFCPEHFF
SPSEPHEIDS LFQHLSEGKM WQGELIGLRN NGETFYLDLT VTVFRESHSN ENGFAWLFSD
ISERKKAAQL IKYQANNDSL TGLANRNALF RQIQELISAD SLTPGFSFML MDLDNFKQVN
DTYGHDKGDA LLVQVVEEIK TCLNDQAVFS RLGGDEFALL LPGIVTQREL SQLAEKINRQ
VYRRYELSLD KGVYSSVSIG IARFPEDALD LEQLLNCADQ AMYISKANGR NRYHFFTEQM
QLNAERTANL HTLLKQALEQ EAFELYFQPI VDATTGLVLR AEVLLRWQHE GQFISPDEFI
PIAENSGLIV NIGRYVRKAV MQTIIDMQAL GWPINLAVNV STFEFWSHEL QDEFCDSFAD
IIEELGLIEF PYELITLEIT ESLLMKQHVH LIKVLNELRG RGIKISLDDF GTGYSSLSYL
ANFPIDQIKI DKSFIDRLDE GERHLALVEA IVRLSHALNL SVTAEGVETE AQLKVMMENH
IQEIQGYIFY KPMPKAAFFE LLAEQAAAHH HS
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