| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2111 |
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| Symbol | |
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| ID | 4252684 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 2518668 |
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| End bp | 2520593 |
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| Gene Length | 1926 bp |
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| Protein Length | 641 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638118735 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_734241 |
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| Protein GI | 113970448 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.396511 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGCAACC CATTGACAAA GATGGTGTTA TCCAGCGCAA TTATCATCGC AGGGGCATTC
AATGCCTCTG CGGCTTTCGC GTTAACTTCT ACCCAGAAGA CCTTTCTTGA GGCTGAAAAA
GCCTTAAAGA AACAAGACTA TGCCACCTAC AAGCCCCTGC GTGCTAAGTT AGGCGATTAT
CCGCTGGCGA TTTATCTCGA CCATGATATC GACATTGGCA AGCTTAACGA TTTACGCGGC
AACGACGCTA AGGCCATGAT AGATAAATAT CAAACCACGC CTATGTATCA GCGCCTGCGT
TCAAAATATT TATTAAATGC CGGCGGCCAA AAGCGTTGGA ATGACTTTTT GAGCCTCGCT
CAAGACGCGC CGACCGATGT CAGGCTACAG TGCTATTTTT ATGAAGCCAA ACTCGCCAAG
GGCGAAACCC AAACCGCCTA CACGGCGGCG CAGTCACTAT GGGTCTATGG CGATTCCCGT
CCTAAGGAAT GCGATCCCCT CTTCAATGCC TGGACCAAGG CCGGTAAGCG CACTCAAGAT
GTGATTTGGG CGCGGATGTT ACTGAGTTTC GATGAGGGCC AAACCAGTCT GCTGAGTTAT
TTATCGCAAA AAATCACCGT GCATAGCGCC GAGGCAAAAC GCTTAGTGGC GGTATTTAAA
GATCCCAATA GCCTGCGCCA TACCGAAAAA TTTAAGGATA AAAATCCTAT TGTTGGCGAT
ATCGTTGCCG CAGGCTTAAA ACGCCTTGCC CGTAAGGATC TCGACCAAGC CATTAATTTA
TATACTCGGT ATCAAAAAGC AAAACGCTTT ACCCCAGCAC AAGATCAACA GCTGCAAAAG
TACTTGGTAC GCCGCGTGTT GATTGAGCAG GATGATAACT TTAAAGACTG GGCCGATAAC
CTGCTGCCCG AGATGAAAAG CGATGATATG TTCGAGCGCC GCTTACGCTG GGCGATCCGC
GAGCAGGACA ACACCCATAT CGCGCGCTAC TTAGATTTAT TATCGCCCGA AACCTTAGCC
AAAGAACGCT GGCAATATTG GCTGTATCGC ACCAACGCAA AACACGCCCC CGAAAGCGCC
ACCAAGGCGT TAGCGGCGGT CAGTAATGAG CGTAACTTTT ACGGTTTTGC CGCGTCACAG
TTATTGAATA AGCCCGTGTC CTTAAATCAA AGCCCAGAGC CTGTAGTGGA TGGGACCAGT
CAAAAACTCG AAGACGACTT AGGCTTTGTG CGCGTATTGG AACTGATGGC ACTGGATCGT
TACTTCGATG CCCGCTATGA ATGGGTTGCC CTGCTAAAAC GCAGCAATAA TGAGATGCGC
GCCCGCTATG GTCGTTATGC CCACGATCAA GGCTGGTATG ACTTTGGCGT GGAGGCCAGT
ATCCAAGGCA AGCTCTGGGA TGATATTCCC CTGCGCTTCC CGATGGCGCA TCAATCTGGC
TTTGAACATG CCAGTAAAAA GCACAAGGTT AATATCGATG AAATCCGCGC CATTAGCCGC
CGCGAAAGTG CGTTTTTCCT TTATGCGACT TCAGGTGTGG GCGCCCGCGG ATTAATGCAA
ATTATGCCCG CTACCGCCAA GGCTACGGCC AAAAAACACG GTGCCAAGTA CCGCGATCCT
AAGGATCTGT ACAGCGCCGA ACTTAACTTA AACTTAGGCA GCGCCTACTA CGCGCAATTA
TTGAAAGAAT TCAATCAAAA CCGCGTATTA GCCACCGCCG CCTATAACGC AGGCCCCTCA
CGGGTTCGCC GCTGGTTAGC GGAGTCGAAT GGTCAACTCG ATGCTATGAG TTTTGTCGAG
TCCATTCCCT TTACCGAGAC CCGTGAATAT GTGCAAGCCG TGTTAAGTTA TCGCTTGATT
TACGAGGCGC AAAAACAAAA GCCACAGCCG TTATTCAACG AGGCCGAGCT CAAGTTCCAT
TACTAA
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| Protein sequence | MCNPLTKMVL SSAIIIAGAF NASAAFALTS TQKTFLEAEK ALKKQDYATY KPLRAKLGDY
PLAIYLDHDI DIGKLNDLRG NDAKAMIDKY QTTPMYQRLR SKYLLNAGGQ KRWNDFLSLA
QDAPTDVRLQ CYFYEAKLAK GETQTAYTAA QSLWVYGDSR PKECDPLFNA WTKAGKRTQD
VIWARMLLSF DEGQTSLLSY LSQKITVHSA EAKRLVAVFK DPNSLRHTEK FKDKNPIVGD
IVAAGLKRLA RKDLDQAINL YTRYQKAKRF TPAQDQQLQK YLVRRVLIEQ DDNFKDWADN
LLPEMKSDDM FERRLRWAIR EQDNTHIARY LDLLSPETLA KERWQYWLYR TNAKHAPESA
TKALAAVSNE RNFYGFAASQ LLNKPVSLNQ SPEPVVDGTS QKLEDDLGFV RVLELMALDR
YFDARYEWVA LLKRSNNEMR ARYGRYAHDQ GWYDFGVEAS IQGKLWDDIP LRFPMAHQSG
FEHASKKHKV NIDEIRAISR RESAFFLYAT SGVGARGLMQ IMPATAKATA KKHGAKYRDP
KDLYSAELNL NLGSAYYAQL LKEFNQNRVL ATAAYNAGPS RVRRWLAESN GQLDAMSFVE
SIPFTETREY VQAVLSYRLI YEAQKQKPQP LFNEAELKFH Y
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