Gene Shewmr4_2099 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2099 
Symbol 
ID4252672 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp2502920 
End bp2504503 
Gene Length1584 bp 
Protein Length527 aa 
Translation table11 
GC content50% 
IMG OID638118723 
ProductEmrB/QacA family drug resistance transporter 
Protein accessionYP_734229 
Protein GI113970436 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.710397 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGTCAGC AAGTAATCGC AGGGCAAGAC CATGCCCAAG CTGAGGGCGT GAATTCGAGC 
GACGCTTTGC AAGCCGATAC TAAACCTAAG TCTGAGCAAC ACCTTGGGTT TATCACGCTT
TCGGTGATGC TGGCGACCAT TATGCAAGCG CTGGATACTA CGATTGCCAA CGTGGCCTTG
CCCCATATGC AGGGCAGCAT GGGGGCAACT CAGGATCAAA TCTCTTGGGT GTTAACCTCC
TATATTGTGG CCGCGGCGAT TTTTATGCCG CTGACGGGTT TTTTAACCGC AAGGCTTGGG
CGTAAACGGG TATTTATGTG GGCTGTGGTG GGCTTTACGA TTGCCTCTAT GCTCTGCGGC
GCGGCGCAAA ACCTCGAGCA AATTGTGTTA TTTCGCTTAT TGCAAGGGGT GTTTGGTGCC
AGCTTAGTGC CTTTATCCCA ATCGGTATTA CTCGACAGTT ACCCGCCAGA GCGCCATGGT
TCGGCCATGG CCCTTTGGGG AGTGGGTGTG ATGGTCGGGC CGATTTTGGG GCCATCCCTC
GGTGGTTGGT TAACTGAGTA TTACAACTGG CGCTGGGTGT TCTATATTAA TCTGCCTTTT
GGGCTATTGG CCTGGTTTGG TCTTGCCGCC TATGTGAAAG AAACGCCACT GGACCATAGC
CGTAAGTTCG ATTTACTCGG TTTTGCCATG TTGAGTCTGG CCATTGGCGC CTTGCAAATG
TTGCTCGATA GGGGAGAATC CCTCGATTGG TTTTCTAGTC GCGAAATTGT TATCGAAGCC
ATTATTGCTG GCATGGCGTT TTATTTGTTT GTGGCCCATA TCTTTACCCA TAAACATCCC
TTTATTGAGC CAGGGCTGTT TAAGGACAGA AACTTCAGTG TGGGGCTTAT CTTCATCTTT
ATCATTGGGA TTATTCTGCT GGCGACCATG GCCTTACTGC CGCCGTTTAT GCAGAACCTG
TTAGGTTATC CTGTGATTGA TGTGGGCTAC TTGCTGGCGC CAAGGGGCGT CGGCACTATG
ATCGCCATGA TGACTGTGGG TAAGCTCGCC GGCAAAGTGG ATGTGCGCTA CCAAATCTTT
TTAGGTTTGA TGCTCACTAT TTTGTCCCTA TGGGAGATGA CGGGTTTTAA CACCAATATT
ACCGGCTGGG ACATAGTGCG CACTGGGGTT ATCCAGGGCC TTGGCTTAGG GTTTATCTTT
GTACCGCTCT CGACCATTAC CTTTGCAACC TTAGCGGCGA AATACCGTAA TGAGGGGACT
GCGCTCTTTA GTCTGATGCG AAATATCGGC AGCAGCATAG GGATCTCTGT GGTGATCACC
TATCTTGCTC AGCACACACA GATGAATCAT GCGGTGTTTG CCGATTACAT TCATCCCTTT
AGTTTTGCGC TGCAACATGC TGTTGATGTT CATGCCGTTG ATTTATCGAC GACGCAGGGC
ATGGCATTAC TCAATGCCGA AGTGAATCGT CAGGCGGCTA CCTTGGCCTA TTTGCAGGAC
TTTAGATTAA TGATGTGGGT GACGTTATCC GCCGTGCCCT TAGTGTTTCT GCTTAAAGGC
GTGCATAAAA AACCAAAGCT TTAA
 
Protein sequence
MSQQVIAGQD HAQAEGVNSS DALQADTKPK SEQHLGFITL SVMLATIMQA LDTTIANVAL 
PHMQGSMGAT QDQISWVLTS YIVAAAIFMP LTGFLTARLG RKRVFMWAVV GFTIASMLCG
AAQNLEQIVL FRLLQGVFGA SLVPLSQSVL LDSYPPERHG SAMALWGVGV MVGPILGPSL
GGWLTEYYNW RWVFYINLPF GLLAWFGLAA YVKETPLDHS RKFDLLGFAM LSLAIGALQM
LLDRGESLDW FSSREIVIEA IIAGMAFYLF VAHIFTHKHP FIEPGLFKDR NFSVGLIFIF
IIGIILLATM ALLPPFMQNL LGYPVIDVGY LLAPRGVGTM IAMMTVGKLA GKVDVRYQIF
LGLMLTILSL WEMTGFNTNI TGWDIVRTGV IQGLGLGFIF VPLSTITFAT LAAKYRNEGT
ALFSLMRNIG SSIGISVVIT YLAQHTQMNH AVFADYIHPF SFALQHAVDV HAVDLSTTQG
MALLNAEVNR QAATLAYLQD FRLMMWVTLS AVPLVFLLKG VHKKPKL