| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2063 |
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| Symbol | |
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| ID | 4252636 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 2456132 |
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| End bp | 2458036 |
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| Gene Length | 1905 bp |
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| Protein Length | 634 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638118687 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_734193 |
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| Protein GI | 113970400 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000511285 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGATGT CTAAATCATA TCCCATCTTT TTATTGCTGA TTTTTTTAGG ACTGTTTGGT
TGGATTTATC ACAACGAGAA TAGCCAACTC AAAGTACAGC AACAGCAAGA ACTCAATAAC
TTCAAACAAT ACTTGGGTAA CTTTTCCCAG TGGCAAGGCA ATGGTGCCGA ACTCTATCAA
ACTATTTCCG CCCATTATCC GCTGCAGTTT TTTCAATATA TCGATGACAC CGATGGACAA
CTCAATTACA CCCAAGGCGA ACTCAATGCT CCAGGCATCA ATCCGGTGGC CACATTATTT
GCCTTAGATT TATCCCATAC GCAAAAACTG ACCGCCGGTC GTTTACAGGT AAAATTAAGT
GCCGATCAGG CAATCAAAAA TGCCATCGAC AGTACCCAAC AATTGGGTCT AATGCTGATA
CTGGCCTACA TTATCTTGAT AGTTGTTTTT ATCCTGCTTA TCAATAAATT AAAGTCATCT
ATCCGTTATG CGGCTGAGTA TATTTCCCAC ATTCCAGAGA TGAATTTTTC CGCCATTGAG
TCCTCCAAAC TCAATGGTGA AATGACACCA GTGAGATTGG CACTCGAAGA CTGCCGCCTG
CAGCTCAAAT CGCAAATGGA TACCCTCACT CAAGAAAACC AGAAACTGCA TAAGGTGGCT
TATCAGGATC CAATCACCGG ATTTGGCAGC CGCCCACGTT TTACCACAAA GTTAGAAAAC
ATTAGTAACC GCAGCGTGCC GCAACTTGGG CTGCTAGCCA TGGTTAAAGC GACTGAGCTT
TCCCATGTGA ACCAGTTACA AGGTCGCTCC GCCGGTGACG ATTATTTAGC CAGTGTCGCC
AATTGCATTC GTAAGGCCTG TTCAAAATAT CCCGATTCGG AATGCTACCG CGTCTCAAGC
GCCGATTTTG CGATTTTTTT ACCCGATTTA GTGTTAAAAG ACGGCCCGAA GTTTTTAGAA
CAACTTAAAG TATTCCTCGA TGAATACCAG CAGATGACTA GAGCCGAATC CGTGGCGCAT
ATGGGCTTAG TGCCATATCA ACAGGGCACA GATCCCGTTA ACCTGCTCTC CTTGGCCGAC
ACCGCCGTGA GCATAGCGCA AACCTTAGGC CCCAACAGTT TCCATATTCA AGAGAAACTC
AATGGTGACG AGCAGTTTGG TGACGACCGT TGGAAAGTAG CAATCAATGA CTTGATCGCC
CGCCAAGCGC TGAAGTTTTT TCAACAACCC ATACAACCTT GCCGCAATGA TGTCGAGGTC
TACCGCGAGT TACTGGCACG CTTTTACAAC AGCGAAGGCA AGTTTTTACC CACCACCACA
GTTATCGCCA TGGCCGAGCG CCACGGCATG AGCACCGAAT TAGATAAACT CGTGGTGATC
AGCACATTAA GAATGCTTAA AGAAAATCCG ACCATTAGCG GTAATTTTGG CATCAATATC
AGCGCTTTTT CGGCCCATCA AGAACTGTTT GTCGGCTGGT TGCGAGATGT TCTCGGCAAG
CACAGGTATA TCGCCTCACG TTTAGTGTTT GAGATCAACG AGTCAGGTAT GCAAGCCAAT
TTAGGTGCCA GCTATAAGTT TGTCCGTGAG GTTCACAGTG TTGGTTCGCG GGTCTCAATC
GAGCGATTCG GGATGAGCTT TACCTCTTTC AAATTCTTCA GCGAAGTCCG CCCAGACTAC
ATAAAACTAG ATGGCAGCTA CACCTCATCA ATCGATGAAG ACAGCAATAA TAAGTTCTTC
GTGCGTATGA TGGTGGATGT GGCAAGACGC ATCGGCATTC GTGTTATCGC GACGAGTGTC
GAACGTCAGG AGGAAAAACT GACCCTCGAA AAACTCCTCG TCGATGGGCT GCAGGGCTAT
TATATTGCCC AGCCCCAAGC CATTACCTTA ACTGACCAAA TTTAA
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| Protein sequence | MAMSKSYPIF LLLIFLGLFG WIYHNENSQL KVQQQQELNN FKQYLGNFSQ WQGNGAELYQ
TISAHYPLQF FQYIDDTDGQ LNYTQGELNA PGINPVATLF ALDLSHTQKL TAGRLQVKLS
ADQAIKNAID STQQLGLMLI LAYIILIVVF ILLINKLKSS IRYAAEYISH IPEMNFSAIE
SSKLNGEMTP VRLALEDCRL QLKSQMDTLT QENQKLHKVA YQDPITGFGS RPRFTTKLEN
ISNRSVPQLG LLAMVKATEL SHVNQLQGRS AGDDYLASVA NCIRKACSKY PDSECYRVSS
ADFAIFLPDL VLKDGPKFLE QLKVFLDEYQ QMTRAESVAH MGLVPYQQGT DPVNLLSLAD
TAVSIAQTLG PNSFHIQEKL NGDEQFGDDR WKVAINDLIA RQALKFFQQP IQPCRNDVEV
YRELLARFYN SEGKFLPTTT VIAMAERHGM STELDKLVVI STLRMLKENP TISGNFGINI
SAFSAHQELF VGWLRDVLGK HRYIASRLVF EINESGMQAN LGASYKFVRE VHSVGSRVSI
ERFGMSFTSF KFFSEVRPDY IKLDGSYTSS IDEDSNNKFF VRMMVDVARR IGIRVIATSV
ERQEEKLTLE KLLVDGLQGY YIAQPQAITL TDQI
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