| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2055 |
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| Symbol | |
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| ID | 4252628 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 2445416 |
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| End bp | 2447599 |
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| Gene Length | 2184 bp |
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| Protein Length | 727 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638118671 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_734185 |
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| Protein GI | 113970392 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.614222 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.877632 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGCGAC GTCAGCATCA GCATTTAGTC GAGTCTTTAG TGCATTCCAC AGCTAAACAG
CAGGGGGATT TTACTAAGAC CGCAGAGTTA GCCACTGAGC TACTTTGCCA AAATTTAGCC
ATTTCTCTGG TATCGGTGTG GATTTTTTCC GCCGATCAAT CGAGCCAATC CCTGGTGGCG
CAATTTGGCG CCATGGCCCT ACAAGACACC TACCGACCTT CGCAGTTGCA GACACTGCCA
CGCTATTTAA ATGAACTAAA AAGTCATAGA CACATAGATG CGGGCAACAC GCTTATCGAT
CCGCGCTTGA CTGAGTTAGT CGATAACTAC TTTGTCCCAC GGCAGATTTT ATCCAGTCTC
GAGATTGGTA TTCGCATTAA CGGCCATCTC GAAGGTGTAC TCTGTCTTGA GCGTGCGCAA
TTAACTCACC ATTGGCACGA TAGCGAAATC CATCTTGCCT GCCAAATGGC CGATCAACTG
GCCCTCACGC TGGCCACCAA ACACTCCTAT GACAAAGAAG AGCGCTTAAG CCTGTTCCGC
TGTGCCACCG AGCAGTCTCG CCAGATGAGC ATGCTGATTA ACCTGCACAC CGAAAAAGTG
GAATACGTGA ATCAAGCTCA CGCGGAGATC ACTGGCTTAG CGCGTGAAAA AAGCATAGGC
ACCAATTTAC GCGAGTTAAG TTTTTTTAAA CAGCACAATG AATTAGCTGA ACTAACGCTC
GCGCAAATCT TCAGAGGCGA GCAGGCCAAG GGCGAAGTGC AATTTAATCG AGCCGATGGA
AGTCGATACT GGCTTAAGTA TGTGGTCAGC CAATTTATCA CCGATCGAGG TAATCATTAC
GCCTTAGTCT CCGGCGAAGA AAGCACGGAT GAACACAACT ATAAAGCAGA GCTTGAGCGT
TTAGCTTGGC GTTGTAGTTT GACTGGGCTG AATAACCGCA GTCACTTTAA TCGAGTACTA
GAGAAAACCA ACAAGGGATT ATTGTTACTC GTTGATTTAG TGGCTTTTAA GCGTTTTAAC
GATACTTATG GTCACGAAAA TGGCGACAGC TTGCTGATTG AAATTGGCCG ACGCTTAAAA
CATTTCTCTG AAATCAATAA GGCAACCGAA ATTGCCCGCG TCGGTAGCGA CGAGTTTGCC
GTGTTGCTCA CCGATGATAA CGCGGTTTAC GATCTGGATT ATTTCAGTAC CCGCCTGTAT
CAGCATTTAG CCATGCCGAT TTTAATCGGT CGTGAGCAAA TCGAGCCAAA ACCCGCACTG
GCAGTTGTCG ATATCGCCTC GGTGGCAAAT TTGTTTGCAC CGCTAACTTG TGCCGATATT
GCCGTGCAAT ACGCGAAAAA GAAAAAGGGC ACTGCTATTC AAGTGTTTAA CAGTGCCTTG
CTCAGTGCTT TTAAGGAAGA TGCGCAAATA GAGCGTGATT TACATAGTGC GATTCGCGGT
CGTCAGTTTG AGCTTTATTA TCAGCCCTTG AGGGATTTAG AGCAGCAAAC CTATATCGGC
GCCGAAGCAC TGATCCGCTG GCATCACCCT AAAAGAGGCG TGCTGTATCC CGGCGCTTTT
ATCGATATTG CCGAACAATC TGGGATGATC AACGCCATTG GTAGCTGGGT ACTGGAGGCC
GCGTGCCGAC AATTAAATAT ATGGCAGCAC CATAATGCCG ATTTAAGCAT GCATGTTAAT
GTGTCGGCGC GGCAGTTTTT TAGTGGAAAC CTGTATGAGC AAGTCTGGCA ACTGCTGACG
CGCTATCGTT TAAAGCCTAA GACCCTGATC CTTGAGATCA CCGAGACGGA ATTAATGGGC
GACATTCGCC ATGCCACGCT CTTATGTCAG GAATTGGCAG AGCTGGGTGT GGGGCTGGCC
ATCGATGACT TTGGTACGGG TTACAGCTCG ATGCGCTATC TTAAACAGTT CCCGATCAGT
AAGTTAAAAA TCGACCGCTC CTTTATCTCC GATCTCACCA TTAGCCGCGA AAGCCAAGAA
ATCGTCTCGG CCATTATTGC GATGGCAAGC GCGCTCAATA TTTCCTTGAC CGCAGAAGGG
GTTGAAACCG CCGAGCAGGA AGCGTTTTTG GCCAAGAGTT TTTGCCATCA GGCGCAGGGG
TATTTATACA GTCCTGCGTT GCGAGAGCCC GAATTTGCGC AATTCTTATT GGCGGCAAAA
GAACCTAATC TTGTGACGCA TTAA
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| Protein sequence | MKRRQHQHLV ESLVHSTAKQ QGDFTKTAEL ATELLCQNLA ISLVSVWIFS ADQSSQSLVA
QFGAMALQDT YRPSQLQTLP RYLNELKSHR HIDAGNTLID PRLTELVDNY FVPRQILSSL
EIGIRINGHL EGVLCLERAQ LTHHWHDSEI HLACQMADQL ALTLATKHSY DKEERLSLFR
CATEQSRQMS MLINLHTEKV EYVNQAHAEI TGLAREKSIG TNLRELSFFK QHNELAELTL
AQIFRGEQAK GEVQFNRADG SRYWLKYVVS QFITDRGNHY ALVSGEESTD EHNYKAELER
LAWRCSLTGL NNRSHFNRVL EKTNKGLLLL VDLVAFKRFN DTYGHENGDS LLIEIGRRLK
HFSEINKATE IARVGSDEFA VLLTDDNAVY DLDYFSTRLY QHLAMPILIG REQIEPKPAL
AVVDIASVAN LFAPLTCADI AVQYAKKKKG TAIQVFNSAL LSAFKEDAQI ERDLHSAIRG
RQFELYYQPL RDLEQQTYIG AEALIRWHHP KRGVLYPGAF IDIAEQSGMI NAIGSWVLEA
ACRQLNIWQH HNADLSMHVN VSARQFFSGN LYEQVWQLLT RYRLKPKTLI LEITETELMG
DIRHATLLCQ ELAELGVGLA IDDFGTGYSS MRYLKQFPIS KLKIDRSFIS DLTISRESQE
IVSAIIAMAS ALNISLTAEG VETAEQEAFL AKSFCHQAQG YLYSPALREP EFAQFLLAAK
EPNLVTH
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