| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1999 |
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| Symbol | |
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| ID | 4252572 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 2381573 |
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| End bp | 2384938 |
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| Gene Length | 3366 bp |
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| Protein Length | 1121 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638118612 |
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| Product | glycoside hydrolase family protein |
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| Protein accession | YP_734129 |
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| Protein GI | 113970336 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3507] Beta-xylosidase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000101187 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000000170847 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGTGCTTA AACGCTCATT CGTGTCAGCA AGCTTGATCA TGGCACTAGC CTCCTGTGGT
GGGGACGACA GCAGCTACAG TGCGAACGAC ACAAATACCT TTACCCCTCC CGCCCCTGTG
ACATCGGCAG ACCCAACAAT TGCAGGTGAG GTGAGCTACA AAAACGCAGT AGTTCATGAT
CCTTCCATCA TTAAAGATAC CGATGGTACC TATTATGTTT TCGGATCCCA CTTGGCGGTG
GCCAGTTCTA CCGACTTGAT GAACTGGACA CAAATTGCCT CGGATGGTGC CGCCAAGAGC
AGCCTGTTTA ATACCTATGA GTCAGAAATC GCGGAAGGCA CTGCATGGAC GGGTGGCTTT
GTTGGTTCGT GGGCACCGGA TGTGATAAAG CTTGCCGACG GTAAGTATCA TTTCTATTAC
GACTTCTGTG GCGGCCCCGA TAAGATTGAT TGCGTATCGC GCTCCTATTT GGGGATGGCC
ACCTCGGACA ATATTTTAGG CCCTTATGTT AACCAAGGCT TGATCCTGAA ATCAGGTCAT
GAGGGGGCTG AAAACCCTGG CGCAAACGGT CAAATTTACG ATGGCTTTGT CGACCCTAAC
GCTATCGATC CAGCCGTGTT TTACGATAAA GATGGCGGCC TATGGATGAC CTATGGTTCC
TATTCCGGCG GGATCTGGGT GATGCAGTTA GATCCAGCAA CGGGTAAACC GTTAGCGGAT
CAGGGCTATG GCACTAAGAT CATGGGCGGC AATTACAGTG CGATTGAAGG GTCTTATGTT
ATCTATAGCC CTGAATCCGA ATACTATTAT ATGTTTACCT CCTTTGGTGG CTTCGCCCAA
AAAGACGGTT ACAACATTCG TATCTCTCGC TCTAAAAATC CTAACGGTCC CTATGTGGAT
GCTGCGGGTC TGGACATGAT TGGCGCAACG GCCGCAGGCA ATATCGCCGA CTATGGCGTC
AAACTGATGG GCGGTTTCCA ATTTGTGGCC CACCCGGGCG ATGTGGGTCA TGATCACGGT
TACCTGTCAC CCGGCCACAA CTCCGCTTTT TATGATGCAC AAACGGGCAA ATACTTCTTA
GTATTCCATA CGCGCTTCCC CGATACCGGC GAAGGTCACA GCGTGCGCGT GCATGAGCTA
TTTCTCAACA GCGATGGTTG GCTAGTTGCC TCACCACAGC GTTATGCACC GATCAACGGC
GATAACATTG TCGATGAAAT CGATGTCACT GGTGATTATC AATTTATTAA TCACGCAAAA
AATATCAATA CGGCGGCGCA CACCTCCCTG CACATTAAGT TATCCCGTAC TTGGACCAAT
AAAGGCAGTG TGTCTGGCGA TGTGACTGGT ACTTACCAAC AGGGCGATGA CAACCAAATC
ACCTTAATGC TAGACAATTT AGGCACTTTT GAAGGCGTAC TCGCCTGGCA ATGGGATCCT
GAGCAAAACA AACTCATGCC AACCTTTAGC GCCATTTCTA ATGATGGGGT GAGTATTTGG
GGCGTGAAGC TCACCGATAA CACCACTGAG GAAATTTTAT CGGCATCGGC AAACGGCATT
AGCCTGCCGA CCGAAGCTAC CGAAGGTAAG ATCGCCTTAC CGATACAAGG TACCCGTGGA
TCAACTATCG AGTGGCAATC GAGCGACGAG TCAGTGATCC GTGCCGATGG CACCATTATC
CGACCCAACG TGGGCGAGGG CGATAAGGTC GTGACCTTAA CCGCGACAAT TATGGTCAAT
GGTAAGAAGG TGACTAAAAC CTTCCAAATT ACTGTATTTG CCCATAAAAC CTATAACCGT
ATTGCCCAGT ACAGCTTCGA GAATAACCTC AAGGATTCCT TAGGCTTATT TGGTGATGGT
CAGCCCACTG GCGATAGGAT CTTCAAAGCG GGTGATACCA TTGGCTACGC CACAGGCTTT
GAAGGACAAG CCCTATCATT AGATGGTGCC CACGGGGTGT TACTGCCATC GGGCATTATC
TCTAGCTACG AGTACACAGT GTCTTTTTGG GCAAGTCCTG CAGTGATTAC AGGATTTACC
ACGGCATTCT TCGGCGCAGT TAACGAGCAA ACCGCTGAAG ATGGTAGTAA GTTCTCCAAT
ACTTGGGTCA GCTTGCTGCC ACAGGGCTGG GACGGTAATA CCATGTTCTG GAGCCATAAT
ATCGATACCA GCGGCAGCTC AGTGCTTGAG ACCTGGTTTG ATGGTGTCAC CGGTGAGCGC
ATCGCTGAAA ACACTTGGTC GCATCTGGCG TTCTCAGTCA ATAAAGGGTT GGTAAAAGTC
TTTATCAACG GGGTTGAGCG CTTTAGCAGC GGTAACCTTG CCAACTACTT TACGGGTGCT
CAGGGCGTTT TCGGTCTTGG GGTTAACTAC TGGGATGTTC CATACAACGG CCTTATCGAT
GAGCTAAAAA TATATGAAGC GGCATTAACG GCTGAAGAAG TCAAAGCCCT CGATATCGAC
AAGTTAGCCG ACAGTGAACT CTTGTCCTCA GCAACGGCCA TTCTGGAGCT AGGCGACTTA
TCGGCGGTGC GTGAAAATAT CGAACTGCCA GTAACGGGAC CTTATGCTTC GGCAATCACT
TGGGTCTCTT CCGATCCAAC CATTATCGAT ACCCGCGGCA CGGTCAATCA GCCAGGCCGT
GAGGAAACCG ATAAGGTGGT GACCCTAACG GCGACCTTAA AACTCGGTCA AGCGACACAG
ACGAAAGTCT TCACCGCCAC CGTTAAGTCT AAGGCGCCGC CAACACCGGT CGCAGTCTAT
AGCTTTGAAG ACAATCTTAA CGACAGTACC GCTAACTTCG GCGCGGGCAC TGTAGTGGGT
AACCTGATTG GCGTTGAAGG CGGTAAAATC AGCTATGTGG ATGGCGCGGT AGGCAAGGCG
GCGGTCTTTG ATGGTGCCTC TGGTGTTGTA TTGCCGAATA ACCTTATCAA AGACTACACC
TACTCAGTGT CGATGTGGCT CAACCCTGAG CAGCTGAATA AGTACACTAC AGCCTTGTTT
GGTTATGCGA CCGATTCTAG CTGGACCAGC GTCTTACCAG GCGGTCAAAA TGATTATGAG
CGCATGGTGT TATGGTCAGG CACAGCATGG TACGACGGTA GAACCGGTTT TGTGATGCCA
AAATCCCAAT GGACGCACCT GGCGTACACA GTGAATGGCG GCGATGTGAA GGTCTATATC
AATGGTGAAT TGAAGTTTAC CGGCGCGAAC TTCCCGAACA TCTTCTCAGT ACCAACCACT
AAGTTTGCGG TCGGGGTCAA CTTCTGGGAT ACGCCTTTCA AAGGGGCAAT CGATGAAATC
AAGTTCTATG ACGAAGCGAT TACTGAACAA GATGTAGCTG ATTTATTTGG CGAATCTAAT
CAATAA
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| Protein sequence | MVLKRSFVSA SLIMALASCG GDDSSYSAND TNTFTPPAPV TSADPTIAGE VSYKNAVVHD
PSIIKDTDGT YYVFGSHLAV ASSTDLMNWT QIASDGAAKS SLFNTYESEI AEGTAWTGGF
VGSWAPDVIK LADGKYHFYY DFCGGPDKID CVSRSYLGMA TSDNILGPYV NQGLILKSGH
EGAENPGANG QIYDGFVDPN AIDPAVFYDK DGGLWMTYGS YSGGIWVMQL DPATGKPLAD
QGYGTKIMGG NYSAIEGSYV IYSPESEYYY MFTSFGGFAQ KDGYNIRISR SKNPNGPYVD
AAGLDMIGAT AAGNIADYGV KLMGGFQFVA HPGDVGHDHG YLSPGHNSAF YDAQTGKYFL
VFHTRFPDTG EGHSVRVHEL FLNSDGWLVA SPQRYAPING DNIVDEIDVT GDYQFINHAK
NINTAAHTSL HIKLSRTWTN KGSVSGDVTG TYQQGDDNQI TLMLDNLGTF EGVLAWQWDP
EQNKLMPTFS AISNDGVSIW GVKLTDNTTE EILSASANGI SLPTEATEGK IALPIQGTRG
STIEWQSSDE SVIRADGTII RPNVGEGDKV VTLTATIMVN GKKVTKTFQI TVFAHKTYNR
IAQYSFENNL KDSLGLFGDG QPTGDRIFKA GDTIGYATGF EGQALSLDGA HGVLLPSGII
SSYEYTVSFW ASPAVITGFT TAFFGAVNEQ TAEDGSKFSN TWVSLLPQGW DGNTMFWSHN
IDTSGSSVLE TWFDGVTGER IAENTWSHLA FSVNKGLVKV FINGVERFSS GNLANYFTGA
QGVFGLGVNY WDVPYNGLID ELKIYEAALT AEEVKALDID KLADSELLSS ATAILELGDL
SAVRENIELP VTGPYASAIT WVSSDPTIID TRGTVNQPGR EETDKVVTLT ATLKLGQATQ
TKVFTATVKS KAPPTPVAVY SFEDNLNDST ANFGAGTVVG NLIGVEGGKI SYVDGAVGKA
AVFDGASGVV LPNNLIKDYT YSVSMWLNPE QLNKYTTALF GYATDSSWTS VLPGGQNDYE
RMVLWSGTAW YDGRTGFVMP KSQWTHLAYT VNGGDVKVYI NGELKFTGAN FPNIFSVPTT
KFAVGVNFWD TPFKGAIDEI KFYDEAITEQ DVADLFGESN Q
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