Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1987 |
Symbol | |
ID | 4252560 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 2362770 |
End bp | 2364272 |
Gene Length | 1503 bp |
Protein Length | 500 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638118600 |
Product | ABC transporter related |
Protein accession | YP_734117 |
Protein GI | 113970324 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.063033 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCTTA TTTTAGAACT CAAGCAGATC AGTAAGCATT ATCCGGGCGT TAAAGCCCTT GAGGATGTGA GCTTACGGTT ATTTGCAGGG GAAGTTCACG CCCTATTGGG CGAAAACGGT GCGGGTAAAT CAACCCTGGT GAAAGTGATG ACAGGCGCCC AGTCGAAAGA CATGGGCGAC ATCCTTTTCC TCGGTGAGCC GCAACACTTC AACACACCAA TGGACGCGCA AAAGGCGGGG ATCAGCACGG TTTATCAAGA GGTGAACTTA GTGCCTAACC TGACCGTGGC ACAAAACCTG TTCCTCGGTT ACGAACCGCG CCGCCTTGGG CTGATCCATT TTAAAAAAAT GTATGCCGAC GCGCGGGCCG TGTTAACCCA GTTCAAACTG GATATCGATG TTAGCGCGCC GCTGTCAGAT TATTCCATCG CGGTGCAGCA ACTGATCGCC ATCGCCCGCG GCGTAGCCAT GTCGGCCAAG GTATTAGTGC TCGATGAGCC TACCGCGAGC TTAGATGCCA AAGAAGTGCA AGTGCTGTTT GGGATCTTAA ACCAGCTCAA AGCCAAGGGC GTGGCTATTG TCTTTATCAC TCACTTCCTC GATCAGGTTT ATCAGATAAG CGATCGCATT ACCGTGTTAC GTAACGGGCA GTTTATCGGC GAATATCTGA CGGCAGAACT GCCACAACCT AAGTTGATTG AAGCCATGCT CGGGCGTTCT CTGCAGGAGC AATTGGTTGA TAAACAGGAA AAGGAGCGCA CAGTCACCCG CGCTGAGGCT GTGCTCTTGT CCCTCAAAGA TGTGTCGGTA AAAGGTTCAA TCCAATCGAT GAATCTCACC GTGCCAAAGG GGCAGGCAGT TGGACTTGCG GGGCTGCTAG GCTCTGGGCG CAGCGAAGTC TGCAACGCCG TATTTGGGCT GGACTTGGTC GATAGCGGCA GTATCCATTT AGCTGGGCAG AAATTGAATC TGTCACAACC CGTGGATGCG ATCAGCGCCG GGATCGCCCT GTGCCCGGAA GATCGCAAGA TTGACGGCAT CATCGGCCCT TTATCGATTC GTGAAAATAT TATCCTCGCG CTGCAGGCAC GTATCGGTTG GTGGCGGTAT TTATCTAAAG CTCGGCAACA GGAAATTGCC CAGTTCTTTA TCGATAAATT ACAGATTGCA ACCCCAGATG CGGATAAACC CATAGAGCAA TTGAGTGGCG GTAATCAGCA GAAGGTGATC CTCGCGCGTT GGTTAGCCAT CGAGCCGATT TTATTGGTAC TGGATGAGCC TACCCGCGGC ATCGATATTG GCGCCCACGC AGAAATCGTC AAGCTTATCA GAACCTTGTG TGATGAAGGC ATGTCACTGC TGGTTGCATC GTCTGAGCTC GATGAGCTCG TGGCCTTTTC GAATAAAGTC GTGGTATTAC GCGACAGATA TGCAGTACGT GAACTTTCAG GAGCGGAATT AACCTCGCAA CACGTAATGC AAGCGATTGC GGAGGGAAAA TGA
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Protein sequence | MSLILELKQI SKHYPGVKAL EDVSLRLFAG EVHALLGENG AGKSTLVKVM TGAQSKDMGD ILFLGEPQHF NTPMDAQKAG ISTVYQEVNL VPNLTVAQNL FLGYEPRRLG LIHFKKMYAD ARAVLTQFKL DIDVSAPLSD YSIAVQQLIA IARGVAMSAK VLVLDEPTAS LDAKEVQVLF GILNQLKAKG VAIVFITHFL DQVYQISDRI TVLRNGQFIG EYLTAELPQP KLIEAMLGRS LQEQLVDKQE KERTVTRAEA VLLSLKDVSV KGSIQSMNLT VPKGQAVGLA GLLGSGRSEV CNAVFGLDLV DSGSIHLAGQ KLNLSQPVDA ISAGIALCPE DRKIDGIIGP LSIRENIILA LQARIGWWRY LSKARQQEIA QFFIDKLQIA TPDADKPIEQ LSGGNQQKVI LARWLAIEPI LLVLDEPTRG IDIGAHAEIV KLIRTLCDEG MSLLVASSEL DELVAFSNKV VVLRDRYAVR ELSGAELTSQ HVMQAIAEGK
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