| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1986 |
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| Symbol | |
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| ID | 4252559 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 2361797 |
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| End bp | 2362738 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638118599 |
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| Product | periplasmic binding protein/LacI transcriptional regulator |
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| Protein accession | YP_734116 |
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| Protein GI | 113970323 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.277686 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0546729 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACATA ATAAAATCAT TACCGCATTG GGATTATGGG CTGTCAGTGC AACTTGTGCC
TACGCCACCA CGGTGGGCTT TTCACAGGTT GGCTCCGAGA GTGGTTGGCG CACCAGCTTT
AGTGAAGCGG TCAAGGCCGA AGCCAAACAG CGTGGCATCG ATTTAAAATT TGCCGACGCT
CAGCAAAAAC AAGAGAACCA AATCAAAGCC GTGCGTAGCT TTATCGCCCA AGGCGTGGAT
GCCATTATTA TCGCTCCCGT GGTAGAAACA GGCTGGAAAC CCGTACTCAA AGAAGCCAAA
CGTGCCCATA TTCCTGTGGT GATTGTCGAC CGTAATATTA AGGTCGATGA TGACTCCTTA
TTCCTTACCC GTATCGCCTC CGACTTTACC GAAGAAGGCC GCAAGATTGG CCAATGGCTA
ATGGATAAAA CCCAAGGCAA CTGCGATATC GCCGAGTTGC AGGGCACAGT AGGTGCAACC
GCAGCGATTG ATCGCGCCGC CGGTTTTAAC CAAGTGATTG CCAATTATCC CAATGCCAAG
ATCGTTCGCA GCCAAACCGG CGAATTTACC CGCGCTAAGG GTAAAGAAGT GATGGAAGGT
TTCCTCAAGG CGCAAAACGG TCAACCACTG TGCGCCGTGT GGTCGCATAA CGATGAAATG
GCCCTTGGCG CCGTGCAAGC CATTAAAGAA GCGGGTTTAA AACCGGGCAA AGATATTCTG
ATTGTCTCCG TGGACGGTGT TCCCGATTAC TTTAAGGCGA TGGCCGATGG CGATGTTAAT
GCCACGGTTG AGCTTAGCCC ATACTTAGGC GGCCCAGCGT TCGATGCTAT CGATGCGTAC
CTGAAGGGCA ATAAGGATCA AGCCAAGCTT ATTAGCACCA CGGGTGATGT ATTTACCCAA
GAAACCGCTG CCGCAGAGTA CGAAAAGCGC CGCCAGCAAT AA
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| Protein sequence | MKHNKIITAL GLWAVSATCA YATTVGFSQV GSESGWRTSF SEAVKAEAKQ RGIDLKFADA
QQKQENQIKA VRSFIAQGVD AIIIAPVVET GWKPVLKEAK RAHIPVVIVD RNIKVDDDSL
FLTRIASDFT EEGRKIGQWL MDKTQGNCDI AELQGTVGAT AAIDRAAGFN QVIANYPNAK
IVRSQTGEFT RAKGKEVMEG FLKAQNGQPL CAVWSHNDEM ALGAVQAIKE AGLKPGKDIL
IVSVDGVPDY FKAMADGDVN ATVELSPYLG GPAFDAIDAY LKGNKDQAKL ISTTGDVFTQ
ETAAAEYEKR RQQ
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