| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1975 |
|---|
| Symbol | |
|---|
| ID | 4252548 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 2348667 |
|---|
| End bp | 2349938 |
|---|
| Gene Length | 1272 bp |
|---|
| Protein Length | 423 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638118587 |
|---|
| Product | inner membrane transport protein YdhC |
|---|
| Protein accession | YP_734105 |
|---|
| Protein GI | 113970312 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00432346 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.238152 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACGT CTAGTAATAT CTTTGTAAAT ATGAAGTTTT TTATATTCTT ATTCTATTTG
GCATTATTAA GCATGTTAGG CTTTATTGCC ACTGACATGT ATTTGCCTGC TTTCAAAGCA
ATTGAAAGTT CGTTCAATTC TTCACCGTCT CAAGTAGCAA TGTCGCTCAC CTGTTTTTTG
GCTGGTTTAG CCTTAGGGCA ACTGATTTAT GGCCCCTTGG TCAGTAAACT CGGCAAACGT
TATGCTCTTA TCCTCGGCCT TGGCATTTTT GCGCTCGCCA GTGTGGCCAT CGCCAATAGC
GACTCGATAC TGATGTTAAA CATCGCTCGC TTCTTCCAAG CCGTTGGCGC CTGTAGTGCA
GGGGTCATCT GGCAAGCGAT TGTGGTCGAG CAATATGATG CCGAAAAAGC GCAGGGGATT
TTCAGTAACA TTATGCCGTT AGTGGCATTA TCACCCGCAT TAGCCCCCAT CCTTGGCGCT
TATATTCTGA ACGATTTTGG ATGGCGTGCA ATCTTTATCT CATTGTGTGT GATTGCCTTT
TTATTGGTGT TGATGACCTT ATACTTCGTG CCGAGCCATG CAGAGCATCA GGATGCTAAG
CCAAGCGCGG TTTCCTACGG CAAGATTTTG AAAAATACCC GTTACCTTGG CAATGTGGTG
ATTTTTGGTG CCTGTTCGGG TGCGTTTTTC GCATATCTTA CTGTATGGCC GATTGTGATG
GAGCAACACG GCTATCAGGC AACAGAGATT GGGCTGAGCT TTATTCCGCA AACCATCATG
TTTATTGTGG GCGGATACGC AAGCAAGTTA TTGATAAAAC GCATTGGTGC CGACCGTACA
CTCAACGTAT TGCTGTCCAT TTTTGGACTC TGCGTTATCT CGATTGTGTT TTTCACCTTA
TTAATGAAGG CGGAAACCAT TTTCCCACTG CTGATTTCCT TCTCGATACT CGCAGCGGCG
AACGGGGCGG TTTATCCCAT TGTGGTGAAC AGTGCTTTGC AGCAATTCAC TCAAAATGCG
GCTAAGGCGG CAGGATTACA GAACTTTTTG CAAATCACCA TCGCCTTTGG CGCCTCAAGT
TTAGTCGCAC TCTGGGCAAG TTCAGGAGAA GTCGCCATAG GTTGGGGCAT TCTGAGCTGT
TCATTAGTGG TGATCTTGGG TTACCTGTTA AAAACCGAAC AAACTTGGGC TGATTTTGCT
AAACACTTTA CTGCGCCAGA TCCTGCTCGT CTTGGGATCA ATGCAGATAC GAAGCAAAAT
CAAGCAGATT GA
|
|---|
| Protein sequence | MKTSSNIFVN MKFFIFLFYL ALLSMLGFIA TDMYLPAFKA IESSFNSSPS QVAMSLTCFL
AGLALGQLIY GPLVSKLGKR YALILGLGIF ALASVAIANS DSILMLNIAR FFQAVGACSA
GVIWQAIVVE QYDAEKAQGI FSNIMPLVAL SPALAPILGA YILNDFGWRA IFISLCVIAF
LLVLMTLYFV PSHAEHQDAK PSAVSYGKIL KNTRYLGNVV IFGACSGAFF AYLTVWPIVM
EQHGYQATEI GLSFIPQTIM FIVGGYASKL LIKRIGADRT LNVLLSIFGL CVISIVFFTL
LMKAETIFPL LISFSILAAA NGAVYPIVVN SALQQFTQNA AKAAGLQNFL QITIAFGASS
LVALWASSGE VAIGWGILSC SLVVILGYLL KTEQTWADFA KHFTAPDPAR LGINADTKQN
QAD
|
|---|
| |