Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1961 |
Symbol | |
ID | 4252534 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 2336518 |
End bp | 2337633 |
Gene Length | 1116 bp |
Protein Length | 371 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638118573 |
Product | L-alanine dehydrogenase |
Protein accession | YP_734091 |
Protein GI | 113970298 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0686] Alanine dehydrogenase |
TIGRFAM ID | [TIGR00518] alanine dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0000331426 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.759568 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTATTG GTGTACCAAA GGAAATTAAA AACCACGAGT ATCGTGTCGG TATGGTTCCT TCAAGCGTTC GCGAATTGAC AATCAAAGGT CACGAAGTGT TTGTAGAAAC TAATGCCGGC ACGGGAATTG GTTTTTCAGA TCAGGATTAT GTTGATGCAG GTGCCAAAAT ATTAGCAACT GCTGCTGAAG TCTTTGCTAA AGCAGAGATG ATCGTAAAGG TAAAAGAGCC TCAAGCAGTT GAACGCGCTA TGCTGCGTCA TGACCAGATT TTATTCACTT ATCTGCATTT AGCGCCAGAT TTACCGCAAA CAGAAGATTT AATTAAAAGT GGTGCCGTAT GTATCGCTTA TGAAACCGTA ACTGATGACC GTGGTGGCCT GCCCCTGCTT GCGCCAATGT CAGAAGTGGC GGGTCGCATG TCGATTCAAG CAGGCGCGAT GGCATTAGAG AAATCCTCTG GTGGCCGCGG CATGTTACTT GGTGGCGTAC CTGGTGTTGA GCCAGCTAAA GTTGTGATTA TCGGTGGCGG CATGGTCGGT ACCAATGCAG CACAAATGGC TGTGGGCATG GGCGCTGATG TTGTCGTACT TGACCGCAGT ATCGATGCAC TGCGTCGCTT AAACGTACAA TTTGGTTCAG CAGTTAAAGC GGTTTACTCT ACTGCCGACG CAATTGAGCG CCATGTATTA GAAGCTGATC TCGTGATTGG TGGCGTATTA ATTCCTGGTG CTGCGGCACC TAAACTTGTG ACTCGTAGCA TGATTGCACG CATGAAACCA GGCAGTGCTA TCGTTGACGT AGCAATCGAC CAAGGTGGTT GTGTGGAAAC TTCACATGCA ACGACTCACC AAGATCCAAC CTACATCGTT GATGACGTAG TGCACTACTG TGTGGCAAAC ATGCCTGGTG CCGTTGCCCG CACTTCAACT TTTGCTCTGA ATAACGCGAC TCTGCCTTAT ATCCTTAAGT TAGCTAACTT AGGTTATAAA GCTGCCCTGT TACAAGACAA ACACTTACTA AACGGTTTGA ACGTGATGCA CGGCAAACTG GTTTGTAAAG AAGTAGCTCA AGCATTAAAT CTTGAGTACA CAGCACCAGC AAGTTTATTA GCCTAA
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Protein sequence | MIIGVPKEIK NHEYRVGMVP SSVRELTIKG HEVFVETNAG TGIGFSDQDY VDAGAKILAT AAEVFAKAEM IVKVKEPQAV ERAMLRHDQI LFTYLHLAPD LPQTEDLIKS GAVCIAYETV TDDRGGLPLL APMSEVAGRM SIQAGAMALE KSSGGRGMLL GGVPGVEPAK VVIIGGGMVG TNAAQMAVGM GADVVVLDRS IDALRRLNVQ FGSAVKAVYS TADAIERHVL EADLVIGGVL IPGAAAPKLV TRSMIARMKP GSAIVDVAID QGGCVETSHA TTHQDPTYIV DDVVHYCVAN MPGAVARTST FALNNATLPY ILKLANLGYK AALLQDKHLL NGLNVMHGKL VCKEVAQALN LEYTAPASLL A
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