Gene Shewmr4_1961 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1961 
Symbol 
ID4252534 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp2336518 
End bp2337633 
Gene Length1116 bp 
Protein Length371 aa 
Translation table11 
GC content47% 
IMG OID638118573 
ProductL-alanine dehydrogenase 
Protein accessionYP_734091 
Protein GI113970298 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0686] Alanine dehydrogenase 
TIGRFAM ID[TIGR00518] alanine dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000331426 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.759568 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTATTG GTGTACCAAA GGAAATTAAA AACCACGAGT ATCGTGTCGG TATGGTTCCT 
TCAAGCGTTC GCGAATTGAC AATCAAAGGT CACGAAGTGT TTGTAGAAAC TAATGCCGGC
ACGGGAATTG GTTTTTCAGA TCAGGATTAT GTTGATGCAG GTGCCAAAAT ATTAGCAACT
GCTGCTGAAG TCTTTGCTAA AGCAGAGATG ATCGTAAAGG TAAAAGAGCC TCAAGCAGTT
GAACGCGCTA TGCTGCGTCA TGACCAGATT TTATTCACTT ATCTGCATTT AGCGCCAGAT
TTACCGCAAA CAGAAGATTT AATTAAAAGT GGTGCCGTAT GTATCGCTTA TGAAACCGTA
ACTGATGACC GTGGTGGCCT GCCCCTGCTT GCGCCAATGT CAGAAGTGGC GGGTCGCATG
TCGATTCAAG CAGGCGCGAT GGCATTAGAG AAATCCTCTG GTGGCCGCGG CATGTTACTT
GGTGGCGTAC CTGGTGTTGA GCCAGCTAAA GTTGTGATTA TCGGTGGCGG CATGGTCGGT
ACCAATGCAG CACAAATGGC TGTGGGCATG GGCGCTGATG TTGTCGTACT TGACCGCAGT
ATCGATGCAC TGCGTCGCTT AAACGTACAA TTTGGTTCAG CAGTTAAAGC GGTTTACTCT
ACTGCCGACG CAATTGAGCG CCATGTATTA GAAGCTGATC TCGTGATTGG TGGCGTATTA
ATTCCTGGTG CTGCGGCACC TAAACTTGTG ACTCGTAGCA TGATTGCACG CATGAAACCA
GGCAGTGCTA TCGTTGACGT AGCAATCGAC CAAGGTGGTT GTGTGGAAAC TTCACATGCA
ACGACTCACC AAGATCCAAC CTACATCGTT GATGACGTAG TGCACTACTG TGTGGCAAAC
ATGCCTGGTG CCGTTGCCCG CACTTCAACT TTTGCTCTGA ATAACGCGAC TCTGCCTTAT
ATCCTTAAGT TAGCTAACTT AGGTTATAAA GCTGCCCTGT TACAAGACAA ACACTTACTA
AACGGTTTGA ACGTGATGCA CGGCAAACTG GTTTGTAAAG AAGTAGCTCA AGCATTAAAT
CTTGAGTACA CAGCACCAGC AAGTTTATTA GCCTAA
 
Protein sequence
MIIGVPKEIK NHEYRVGMVP SSVRELTIKG HEVFVETNAG TGIGFSDQDY VDAGAKILAT 
AAEVFAKAEM IVKVKEPQAV ERAMLRHDQI LFTYLHLAPD LPQTEDLIKS GAVCIAYETV
TDDRGGLPLL APMSEVAGRM SIQAGAMALE KSSGGRGMLL GGVPGVEPAK VVIIGGGMVG
TNAAQMAVGM GADVVVLDRS IDALRRLNVQ FGSAVKAVYS TADAIERHVL EADLVIGGVL
IPGAAAPKLV TRSMIARMKP GSAIVDVAID QGGCVETSHA TTHQDPTYIV DDVVHYCVAN
MPGAVARTST FALNNATLPY ILKLANLGYK AALLQDKHLL NGLNVMHGKL VCKEVAQALN
LEYTAPASLL A