Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1951 |
Symbol | |
ID | 4252524 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 2328664 |
End bp | 2330043 |
Gene Length | 1380 bp |
Protein Length | 459 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638118563 |
Product | MATE efflux family protein |
Protein accession | YP_734081 |
Protein GI | 113970288 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000000663691 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.290024 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCATT CAGGCTTTCA GGCCAAACGC TTAATTCAAC TCGCACTCCC AGTGTTGATC GCCCAAGTGA CACAAACCAT GATGGGGTTT ATCGATACTG TTATGGCGGG CCGCGTCAGT GCTGTCGATA TGGCCGCCGT GGCCGTAGGA ACTAGTCTTT GGTTACCCGC CATCTTATTT GTCCAAGGGT TGTTGATGGC GTTTACGCCG TTATTTGCCC ATCACAATGG CGCAAACAAT CAGAAAGCCA TTCAACCGCT GGCGTTTCAA GGCGCTTATC TGGCCTTAAT TGGTGGCCTT GGCGTGATGG CGTTTCTCGC ATCCGCGCCA CTCGTGCTTA GCCATATGAA TTTAGAGCCC CAATTGTACA ACTTAACCAT AGGATATATC GACGGTATTT TATGGGGCGC GCCCGCATTT GTGCTCTATC AGGTATTACG CGGTTGCAGT GAAGGGATTT CTTACACATT ACCGACCATG ATCATCGGAT TCGTGGGGTT AGCGGTGAAT ATCCCGGCAA ACTATATCTT TATCTATGGC CATTTCGGCG TGCCAGCCAT GGGCGGCGCA GGTTGTGGTG TCGCGACTGC TTTAGTCTTT TGGGCCATGT TAATAGCCAT GACGATTTAT ATGCAGTTCC ATAAAAAGTT TGCTGCATTG GCGCCCTTTA GCCAGTTCCA TCGCCCCGAT TTTACCACGA TGAAGAAGAT GACGAAGCTT GGGATGCCGA TTGCGATGGC GCTCTTCTTT GAGGTGAGCC TGTTTGCGAT TATCGCCCTG CTGCTGGCGC CATTAGGCGC GACTGTGGTG GCCAGCCATC AGATTGCGTT GAACTTCTCC GCCATAGTAT TTATGTTGCC ACTTTCGATA GGTATTGCCG TCTCGATTCG TATTGGCTAC TACCTCGGCC GCGATCGTGC GGATATTTCT GCCGTGGTGG CAAAGGTCGG ATTGTGGTTG GCGCTTTCAT TGGCATTGTC GACGGCAATC TTAACTGTGT TATTCCGTTT CCAAATCGCC GAGTTGTATA ACGGCGATCC CGAAGTGGTG GTACTTGCGG GCAGTTTGAT GCTGATGGCC GCGCTGTATC AATTATCTGA CTCTGTCCAA GTGGTCGCCG CCGGCGCCTT GCGTGGATAT AAAGATACCC GCAGTGCGTT TTACATTACG CTATTCTCCT ATTGGGGCAT CGGCATGACA TTAGGTTACA CCTTGGCGTA TACCGACTTA ATCGTCCCCG CCATGGGCGC CCATGGTTTT TGGACAGGAT TAATTGCAGG CCTCACCTCG GCGGCGCTGC TGTTTTTCAT CCGCCTTCGT TATATTCAAA AGCATGGTGT GCATTTAAGT TTGATTGAAG GCGACAGCGT GCATCACTAA
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Protein sequence | MNHSGFQAKR LIQLALPVLI AQVTQTMMGF IDTVMAGRVS AVDMAAVAVG TSLWLPAILF VQGLLMAFTP LFAHHNGANN QKAIQPLAFQ GAYLALIGGL GVMAFLASAP LVLSHMNLEP QLYNLTIGYI DGILWGAPAF VLYQVLRGCS EGISYTLPTM IIGFVGLAVN IPANYIFIYG HFGVPAMGGA GCGVATALVF WAMLIAMTIY MQFHKKFAAL APFSQFHRPD FTTMKKMTKL GMPIAMALFF EVSLFAIIAL LLAPLGATVV ASHQIALNFS AIVFMLPLSI GIAVSIRIGY YLGRDRADIS AVVAKVGLWL ALSLALSTAI LTVLFRFQIA ELYNGDPEVV VLAGSLMLMA ALYQLSDSVQ VVAAGALRGY KDTRSAFYIT LFSYWGIGMT LGYTLAYTDL IVPAMGAHGF WTGLIAGLTS AALLFFIRLR YIQKHGVHLS LIEGDSVHH
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