Gene Shewmr4_1943 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1943 
Symbol 
ID4252517 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp2319129 
End bp2320238 
Gene Length1110 bp 
Protein Length369 aa 
Translation table11 
GC content42% 
IMG OID638118554 
Productphage integrase family protein 
Protein accessionYP_734074 
Protein GI113970281 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.171548 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.0940691 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTAAAT CGATTATCCA TTATTCCACA GGTGGAAATG CTCCTAGCCG TTCCTCTGGC 
ATAGCATCAA ATTTCACATC AAGTGATAAA CAAATGGATA CGCCATTTTT TGAGGAAAGC
TCACTGCCCC AATCGGTTCA CAGTGATTTT TTTAACGCGG CCGCCGAAAC TGAATACGAA
ATCTCCATCA ATACCCGTCG GGTTTATCGG ACCAGCTTTG GCCTATTTGA ACAATATTGC
ACGGCGCATC AGCTGCAGTC CTTACCCGCC GATCCGCGCA GTATTATTTC TTTTATCGGT
CATCAAAAAG AATTGCTCCA AGCAAGCAGT GGGACTCAGC TTTCAAAGCA AACCTTAACG
ACTCGGCTAG CCGCGATCCG TTACTATCAT ATTCAAGCAG GATTTCCATC CCCCACCGAA
CACCCGTTGG TGATCCGTGT GATGCGCGGC CTTAGTCGTA ATCACCATAG GCAAGTCCAA
GATTATGATC AGCAACCAAT CATGTACGAT GAGGTCGAGC TATTGCTCCA AGCGATAGAG
CAACAACCCC ATCCATTGTT GCGCTCAAGG GATAAGGCCA TTATTCAACT TGGACTACAA
GGTGGATTTC GCCGCTCAGA ATTGGCCAAT TTAAAAGTAC AATATTTAAG TTTTATGCGG
GATAAATTAA AAGTACGGCT GCCTTTTTCT AAAAGCAATC AGCAGGGATT AAGGGAATGG
AAGAATTTAC CCGACTCTGA ACCTTTTGCT GCATATAATG CCGTCAAGGA CTGGTTAAAT
GAAAGTAAAA TTACCGAAGG TCATTTATTT CGCTCAATTT CTCGAGATGG AAAAACCTTA
AGACCTTATC AAGTCAGTGA TAATGTCACA TCTAAATCAT CACTCATTCG AAATAGTGGA
TTCTTAAATG GTGATGATAT TTATCGGATC ATTAAACAAT ATTGTCTAAA GGCAGGTTTA
CCAGCGCAAT ATTATGGCGC CCATAGTTTG CGTAGTGGAT GTGTTACGCA ACTTCATGAA
AATAATCGAG ATACATTGTA TATCATGGCA AGAACTGGAC ATACGGATCC CCGCTCATTA
CGCCATTACC TCAAGCCAAA AGAAGATTAA
 
Protein sequence
MSKSIIHYST GGNAPSRSSG IASNFTSSDK QMDTPFFEES SLPQSVHSDF FNAAAETEYE 
ISINTRRVYR TSFGLFEQYC TAHQLQSLPA DPRSIISFIG HQKELLQASS GTQLSKQTLT
TRLAAIRYYH IQAGFPSPTE HPLVIRVMRG LSRNHHRQVQ DYDQQPIMYD EVELLLQAIE
QQPHPLLRSR DKAIIQLGLQ GGFRRSELAN LKVQYLSFMR DKLKVRLPFS KSNQQGLREW
KNLPDSEPFA AYNAVKDWLN ESKITEGHLF RSISRDGKTL RPYQVSDNVT SKSSLIRNSG
FLNGDDIYRI IKQYCLKAGL PAQYYGAHSL RSGCVTQLHE NNRDTLYIMA RTGHTDPRSL
RHYLKPKED