Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1943 |
Symbol | |
ID | 4252517 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 2319129 |
End bp | 2320238 |
Gene Length | 1110 bp |
Protein Length | 369 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638118554 |
Product | phage integrase family protein |
Protein accession | YP_734074 |
Protein GI | 113970281 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.171548 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.0940691 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCTAAAT CGATTATCCA TTATTCCACA GGTGGAAATG CTCCTAGCCG TTCCTCTGGC ATAGCATCAA ATTTCACATC AAGTGATAAA CAAATGGATA CGCCATTTTT TGAGGAAAGC TCACTGCCCC AATCGGTTCA CAGTGATTTT TTTAACGCGG CCGCCGAAAC TGAATACGAA ATCTCCATCA ATACCCGTCG GGTTTATCGG ACCAGCTTTG GCCTATTTGA ACAATATTGC ACGGCGCATC AGCTGCAGTC CTTACCCGCC GATCCGCGCA GTATTATTTC TTTTATCGGT CATCAAAAAG AATTGCTCCA AGCAAGCAGT GGGACTCAGC TTTCAAAGCA AACCTTAACG ACTCGGCTAG CCGCGATCCG TTACTATCAT ATTCAAGCAG GATTTCCATC CCCCACCGAA CACCCGTTGG TGATCCGTGT GATGCGCGGC CTTAGTCGTA ATCACCATAG GCAAGTCCAA GATTATGATC AGCAACCAAT CATGTACGAT GAGGTCGAGC TATTGCTCCA AGCGATAGAG CAACAACCCC ATCCATTGTT GCGCTCAAGG GATAAGGCCA TTATTCAACT TGGACTACAA GGTGGATTTC GCCGCTCAGA ATTGGCCAAT TTAAAAGTAC AATATTTAAG TTTTATGCGG GATAAATTAA AAGTACGGCT GCCTTTTTCT AAAAGCAATC AGCAGGGATT AAGGGAATGG AAGAATTTAC CCGACTCTGA ACCTTTTGCT GCATATAATG CCGTCAAGGA CTGGTTAAAT GAAAGTAAAA TTACCGAAGG TCATTTATTT CGCTCAATTT CTCGAGATGG AAAAACCTTA AGACCTTATC AAGTCAGTGA TAATGTCACA TCTAAATCAT CACTCATTCG AAATAGTGGA TTCTTAAATG GTGATGATAT TTATCGGATC ATTAAACAAT ATTGTCTAAA GGCAGGTTTA CCAGCGCAAT ATTATGGCGC CCATAGTTTG CGTAGTGGAT GTGTTACGCA ACTTCATGAA AATAATCGAG ATACATTGTA TATCATGGCA AGAACTGGAC ATACGGATCC CCGCTCATTA CGCCATTACC TCAAGCCAAA AGAAGATTAA
|
Protein sequence | MSKSIIHYST GGNAPSRSSG IASNFTSSDK QMDTPFFEES SLPQSVHSDF FNAAAETEYE ISINTRRVYR TSFGLFEQYC TAHQLQSLPA DPRSIISFIG HQKELLQASS GTQLSKQTLT TRLAAIRYYH IQAGFPSPTE HPLVIRVMRG LSRNHHRQVQ DYDQQPIMYD EVELLLQAIE QQPHPLLRSR DKAIIQLGLQ GGFRRSELAN LKVQYLSFMR DKLKVRLPFS KSNQQGLREW KNLPDSEPFA AYNAVKDWLN ESKITEGHLF RSISRDGKTL RPYQVSDNVT SKSSLIRNSG FLNGDDIYRI IKQYCLKAGL PAQYYGAHSL RSGCVTQLHE NNRDTLYIMA RTGHTDPRSL RHYLKPKED
|
| |