| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1940 |
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| Symbol | |
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| ID | 4252514 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 2312172 |
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| End bp | 2315339 |
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| Gene Length | 3168 bp |
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| Protein Length | 1055 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638118551 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_734071 |
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| Protein GI | 113970278 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
[TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0454025 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00180133 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCGCAGT TTTTTATTAA TCGGCCGATT TTTGCCAGCG TTATCTCCAT CGTTATCGTG
CTGCTCGGGG TGATCGCTAT GTTTAAGCTG CCCGTCGATC AGTATCCTTA CATCACGCCG
CCACAGGTGA CGATTTCGGC CTCTTATCCG GGCGCCAGTT CTACTACGGC CGCCGAGTCC
GTCGCCACAC CGCTCGAACA GGAAGTGAAC GGTGTGCCCA ATATGATTTA TATGAGTTCA
AAGAGTACGA ACTCGGGCAG CACCAGTGTG ACTATTACCT TCGATGTGGG TACTAATGCG
GACTTGGCTG CGGTGGATGT GCAAAACTCC GCTCAACAAG CTTCGGGTGG ACTGCCAATC
GACGTGCAAA CCGAAGGGGT GACTGTCTCT AAAGATGCGT CGGTGGAATT ATTAAAACTG
GCGTTAACCT CGAACGATGA AAGGTTCGAT GAGATTTACC TCAGTAATTA CGCCACCATC
AATATCGAAT CGGCGCTCAA GCGGATCCCC GGCGTGGGCC GCACCCGTAA CACGGGTTCA
CGCAGTTATG CGATGCGTAT TTGGTTAAAA CCCGATGCCA TGGCGGGGTA TAGCTTAACC
ACCACAGATG TGATCAACGC CATCAAGGCA CAAAATAAAG AATCCCCCGC AGGCACCATT
GGTACTCAAC CCAATAATGA CGATATCAGT TTAACCTTGC CCATCAGTGT GGCGGGCAGA
TTAAGCTCGG TGCAAGCATT TAACGAGATC ATAGTGCGCG CCAACCCCGA CGGCTCAATT
ATCCGGCTAC GGGATATTGC TGGCGTAGAA CTCGGCTCCT CCGCCTACAC GTTGCAATCC
CAGTTAAACG GTGAAAATGC CACCATCTTA CAGGTGTATT TGCTCCCCGG CGCCAATGCC
CTCGAGGTTA CCCATAAGGT GAAACAGGCG ATGGCCGAAC TGTCGCAAAA GTTTCCCCAA
GGGATGAAAT GGGAAGTGTT TTATGACGCA TCCATCTTTA TTCAAGAATC TATCGATGAG
GTGATCCACA CCCTCATCGA GGCCTTAGTG CTTGTGGTGT TGGTGGTTTA CTTGTTCCTG
CAGAATGTGC GCGCCACTTT GATCCCCGCC ATTGCGGTAC CAGTTTCCTT GATAGGCACC
TTGGCGGCCA TGCTGGCCTT TGGTTTTACC ATTAATACTG TGAGTTTACT CGCGCTGGTT
CTCGCCATTG GGATTGTGGT CGACGATGCC ATTGTGGTGG TCGAAAACGT CGAGCGTTTA
ATTCACGAGA AAGGCATGAG CGCCATCGAT GCGACTCGGA TTGCGATGAA AGAATTGTCG
GGTGCACTGG TTGCCACCAG TTTAGTGCTC TGCGCGGTAT TCGTCCCCGT GTCATTCTTA
GCGGGGATCA CAGGCATCAT GTACCGCGAG TTTGCGGTGG CAATTACGGT TGCCGTGTTG
ATTTCTACTC TAGTGGCGTT GACCCTAAGT CCCGCACTCT GCGCCTTACT ATTAAAACCG
AGTAAGGCAC CACAGCGGGG ATTCTTTCAC TGGCTGAATC GCAAACTCGA CTTGGGGACC
AATCAATATG TCGGTTTAGT CGCCTTAACC AATAAATACG CCAAACGCAG TTACTTAGCT
TTTGCAATTA TGTTTGGTGG TACCTATTTC ATCATGTCCC ACTTACCGAG CAGCTTTATG
CCCGACGAGG ACCAAGGTCG ATTCTTTATC GATATGACAT TACCCGATGG CTCTACGGTT
AATCGTACCG AGGCGATTTT AAAGAAAGCC GAGCAATATG TGCGCGCCAA TCCCGCTGTT
GCCTATTCAT TTACGCTGGC GGGGGAAAAC CGCCGCTCGG GGGCAAATCA GGCTAACGGC
CAATTTGAAG TGGTGCTTAA GCCTTGGGCT GAGCGCGAAG CCAGTCATGC CACGGTACAA
TCCGTGATGA AGGCGATAGA TAAGGATCTG AAAAACGTCT TAGAAGCTGA GTTTAACCTG
TATTTGCCAT CGGCCGTCCC CGGTTTAGGC AATGGATCTG GGGTGGAAAT GCAGCTCCAA
GATACCTCAG GCACCCATTT TGATGGCTTG ATTGAAACCG CCAACGAATT AGTCGAGCAG
CTAAAGCTGC AGCCTGAGGT TGCCAGTGCC AGCGTGTCGT TGCAGAGCGC AATCCCGCAA
TTGCACTTAA CGGTCGATGA GGCAAAGGCG ATGGCGATTG GGGTGAATGT GGGTGATATC
TACAGCACAA TCAAAACCTT AACCGACTCA TCAACCGTGA ATGACTTTAA CCTCTTTGGC
CGGGTGTATC GGGTGAAGAT CCAAGCGGAA GAGAGTTACC GTCAATTCCC ACACCAAATC
AAAGATTATT ATGTGCGCTC ATCGAACGGC GCTATGGTGC CGATTGGTGT GCTGGCTAAG
TATGATTATA CGGTGGGACC ATCTTCCGTG ACCCACTACA ATTTATTCTC CAGCGCCTCC
ATCAATGTGA CGCCCGCAAC GGGCTACGCG ACAGGCGATG TTATTCAAGC CATCGAGCGG
GTCGCAACGC CGATCCTGCC CGATGAGTTT AAATACGAAT GGACAGGCAT TACCTACCAA
GAGGTGCAGT CGGCAAACCA AACCGGCATT GCCATTGGGT TAGCCCTGTT ATTTGTATTC
CTGTTTTTAG CTGCGCTCTA TGAGAGTTGG AGTATCCCTG TGGCGGTATT GCTGATCGCG
CCCATCGCAC TCTTAGGCGC GGCGGTCACG ACCTTAATCA GTGGTATGCA GAGTAACTTA
TTCTTCCAAG TGGCATTTAT TGCCTTAATC GGCATGGCCG CGAAGAATGC GATTTTAATT
GTCGAGTTTG CCAATCAGTT GCACCAGCAG GGGCGTACGC GAATTTCGGC GGCGCTCGAA
GCGGCGACCA TGCGCTTTAG GCCGATTTTA ATGACCTCAA TGGCGTTTAT TCTTGGGGTG
TTACCGCTGG TGTTATCCGA AGGGCCAGGG GCCGTGAGTC GGCAATCAAT TTCGTTACCT
ATCCTGGGTG GAATGGTGTT GGCAACCACC ATAGGTATAG TGTTTGTGCC GCTATTCTTT
GTGACGACCG CAGGCTGGGT AAAAAAGAAA ACCGTTAAAC AACCTATTAA AACAAAAGAG
GAATTACTCC TAGATCAAGA AACCGTTGAG GAGGTGAGCC GTGGTTAA
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| Protein sequence | MAQFFINRPI FASVISIVIV LLGVIAMFKL PVDQYPYITP PQVTISASYP GASSTTAAES
VATPLEQEVN GVPNMIYMSS KSTNSGSTSV TITFDVGTNA DLAAVDVQNS AQQASGGLPI
DVQTEGVTVS KDASVELLKL ALTSNDERFD EIYLSNYATI NIESALKRIP GVGRTRNTGS
RSYAMRIWLK PDAMAGYSLT TTDVINAIKA QNKESPAGTI GTQPNNDDIS LTLPISVAGR
LSSVQAFNEI IVRANPDGSI IRLRDIAGVE LGSSAYTLQS QLNGENATIL QVYLLPGANA
LEVTHKVKQA MAELSQKFPQ GMKWEVFYDA SIFIQESIDE VIHTLIEALV LVVLVVYLFL
QNVRATLIPA IAVPVSLIGT LAAMLAFGFT INTVSLLALV LAIGIVVDDA IVVVENVERL
IHEKGMSAID ATRIAMKELS GALVATSLVL CAVFVPVSFL AGITGIMYRE FAVAITVAVL
ISTLVALTLS PALCALLLKP SKAPQRGFFH WLNRKLDLGT NQYVGLVALT NKYAKRSYLA
FAIMFGGTYF IMSHLPSSFM PDEDQGRFFI DMTLPDGSTV NRTEAILKKA EQYVRANPAV
AYSFTLAGEN RRSGANQANG QFEVVLKPWA EREASHATVQ SVMKAIDKDL KNVLEAEFNL
YLPSAVPGLG NGSGVEMQLQ DTSGTHFDGL IETANELVEQ LKLQPEVASA SVSLQSAIPQ
LHLTVDEAKA MAIGVNVGDI YSTIKTLTDS STVNDFNLFG RVYRVKIQAE ESYRQFPHQI
KDYYVRSSNG AMVPIGVLAK YDYTVGPSSV THYNLFSSAS INVTPATGYA TGDVIQAIER
VATPILPDEF KYEWTGITYQ EVQSANQTGI AIGLALLFVF LFLAALYESW SIPVAVLLIA
PIALLGAAVT TLISGMQSNL FFQVAFIALI GMAAKNAILI VEFANQLHQQ GRTRISAALE
AATMRFRPIL MTSMAFILGV LPLVLSEGPG AVSRQSISLP ILGGMVLATT IGIVFVPLFF
VTTAGWVKKK TVKQPIKTKE ELLLDQETVE EVSRG
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