| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1939 |
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| Symbol | |
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| ID | 4252513 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 2310916 |
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| End bp | 2312172 |
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| Gene Length | 1257 bp |
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| Protein Length | 418 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638118550 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_734070 |
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| Protein GI | 113970277 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0238209 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.000755342 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCTCAAC CATCTGTTAT AGCTCGTTTT TCAGTATCAC GCTTCGGCTC ATTTCCCCTT
TATTTGAGTG GTGTTTTGCT CTGTCTCTCT GTGAGTGGCT GCAAGGAACC CGAGATTAAA
ATCTCCCCCA AAATGGTCGT GGTGGAGAAA GTCACCACGG CAACTGTGCC GCTCTACGGT
AATTATATCG GCGTGACCCA AGCCTCCTTA GATGTGGAAG TACGGGCGCG GGTCGATGGC
TTTGTAGAGG AAAAACGTTT TGTCGAAGGC AGCGCGGTCA AGGCGGGTGA ACTGCTGTAT
CAGATTGATA ATAAACCCTA TGTAGCTGTG GTGAATCGGT TAAAGGCCAA ACTCTCTTCA
CAACAGGCCA TTGTTGATAA GGCCGAGCGG GATGTTAAAC GTCTAAAGCC GCTATATGAG
CAAGATGCCG CCAGTCAACT CGATTATGAT AATGCACTTT CCACACTGGC TCAGGCACGA
TCTAACCTCA CTGCGAGCCG CGCCGAAGTG GAGGAGGCCG AATTAGAGCT GAGTTATACC
GAAATTAAGG CACCGATAGC CGGACTGGTG AGTCGCTCCG AGGTCGACAT TGGCGCACTC
GTGGGCAGTA AGGGCCAATC GCTCCTGACG CGGGTTAAAC AAGTTGACCC GATTTATGTC
AGCTTTAATA TGTCGGCGCT CGATTACTTA AATGCCCAGC GACGCTTGAC CAGTTACTCG
GCGAAGAAAG AAGCTGAGGT TGAAGGTAAG GCGCTGGCAG GCTTTGTGCG AATTACGCTT
CCCGATAACA GTGAATACCG CTATTTAGGG GATGTGAGTT TTACCGATCC CCAGGTTAAC
CCCAATACTG GCACCTTTGA GGTGCGGGCC ATTCTGCCCA ACCCTGAGAA GGAGCTGTTG
CCCGGCCAAT ATACCAATGT ACGGATTAAA TTATCCGAAA TCCCCAATGC GATTGTCATC
CCGCAAAGAG CTACCCAAGT GGACCAAGGC GGGGTATACG TGATGGTAGT ATTGCCCAAT
AACACGGTCG AACGGCGCTT TATCGTGATC GATCACCAAG GGATTGAAGG TGTGGTGGTC
AAAAGTGGCC TCAAGGCTGG GGAGATGGTG ATCACCGAAG GTATGCACCG TGTACGCCAC
GGGCAAATTG CTGAGCCATT AAGTGCTAAG GAATACGCCG AGAAGGAAGA TGAAATGTCA
AAAGCCGAGG CACTTAAGCG CCAAGCCTTG GAGCAGCAAA AGCAGGAGCA AAAATAA
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| Protein sequence | MPQPSVIARF SVSRFGSFPL YLSGVLLCLS VSGCKEPEIK ISPKMVVVEK VTTATVPLYG
NYIGVTQASL DVEVRARVDG FVEEKRFVEG SAVKAGELLY QIDNKPYVAV VNRLKAKLSS
QQAIVDKAER DVKRLKPLYE QDAASQLDYD NALSTLAQAR SNLTASRAEV EEAELELSYT
EIKAPIAGLV SRSEVDIGAL VGSKGQSLLT RVKQVDPIYV SFNMSALDYL NAQRRLTSYS
AKKEAEVEGK ALAGFVRITL PDNSEYRYLG DVSFTDPQVN PNTGTFEVRA ILPNPEKELL
PGQYTNVRIK LSEIPNAIVI PQRATQVDQG GVYVMVVLPN NTVERRFIVI DHQGIEGVVV
KSGLKAGEMV ITEGMHRVRH GQIAEPLSAK EYAEKEDEMS KAEALKRQAL EQQKQEQK
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