| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1936 |
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| Symbol | emrD |
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| ID | 4252510 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 2306620 |
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| End bp | 2307864 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638118547 |
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| Product | multidrug resistance protein D |
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| Protein accession | YP_734067 |
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| Protein GI | 113970274 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00880] Multidrug resistance protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000117708 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATGTCAG ACAAAATACC GTCTTTAATC TCACAAAAAG CGCCGACACC CGCAGCAGGC
AACACTACTC AGTTACTCTT TATGCTGGTA TTTATGGTGG CTTGCGGGCA GATGGCACAA
ACCATATTTG TCCCCGCACT CCCCCTTATC GCCCAGGGCT TAGCCGTGGA TGCCAGTAAA
TTACAGGCGT TGATGGCCTG TTATCTACTC GCCTACGGCT TATGTCAGTT TATCTATGGC
CCATTATCCG ACCGAGTTGG GCGTAAAATT CCGCTGCTCA TTGGCATCGG GATTTTTATC
GTCGGCGCGT TTATGGCGGC AGAAGCCACA AGTTTTAGCC AACTGATTTT CGCGAGCTTA
CTTCAGGGAC TGGGTACAGC GAGTGCCGGC GCGCTGTGCC GCAGTATTCC AAGGGACCAT
TATTTTGGCG ATAACTTAGT AAAATTTAAT AGTTATGTGT CTATGGCCGT GGTGTTTTTG
CCCTTGGTGG CGCCCTTCTT AGGCAGCTTC GCCTCGGCTT ACTTTGGATG GCAAGCGGTT
TATTGGGTGC TATTTGGATT TGGCTCTTTT GTTTGGCTAC TCATTTGCTT TGGCTTTAAG
GAGTCCTTAC CAAAAGAGAA GCGGGAACAA CAACCCATAT TGGCATCCTA TCGCCATGTG
CTGCGTCACC GTGGCTTTAG GGCCTATTTG CTGTCTCTTA TCGCCACTTT TGCCGGAATA
GCCGCCTTCG AAGCCATAGC TGGTGTGCTC TATGGCCAAT ATTTGCAACT CTCGCCTGTT
ATGGTGAGCT GCTATTTTGT GGCCCCAATC CCAGGATATT TGCTCGGTGC CCTTATTGCT
GGCAGAAAAA AACAGCCACA GCGAACTGTT TTACAAGGTG TTGCCCTTCT GGGAGCGGGT
GCGCTGTTTA TCTTGATCCC CGGAATATTT CAGCTGGTCG TGGGGTGGAG TTTATTGATA
GGTTCAATTC TGTTCTTTAG CGGCGCAGGC ATGTTATTTC CGACATTAAC CTCGGCCGCT
TTAGAACCAT TTCCGCGTCA GGCAGGAATT GCAGGTGCCT TGCTAGGCGG TTTACAAAAT
TTCGGCGCGG GGCTTGCCGC CTTAACCATG TCTTTAGTGC CTATGGGTGG CCAGTTAAGT
ATCGGTTTGC TGAGTGCACT GATGGTGCTG TTAGTGATTG TCGCCTTGCA TTATGCTAGG
GATCAAAACG ATAGCCATCA CACTCTGTTA CCACAAAACT CATAG
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| Protein sequence | MMSDKIPSLI SQKAPTPAAG NTTQLLFMLV FMVACGQMAQ TIFVPALPLI AQGLAVDASK
LQALMACYLL AYGLCQFIYG PLSDRVGRKI PLLIGIGIFI VGAFMAAEAT SFSQLIFASL
LQGLGTASAG ALCRSIPRDH YFGDNLVKFN SYVSMAVVFL PLVAPFLGSF ASAYFGWQAV
YWVLFGFGSF VWLLICFGFK ESLPKEKREQ QPILASYRHV LRHRGFRAYL LSLIATFAGI
AAFEAIAGVL YGQYLQLSPV MVSCYFVAPI PGYLLGALIA GRKKQPQRTV LQGVALLGAG
ALFILIPGIF QLVVGWSLLI GSILFFSGAG MLFPTLTSAA LEPFPRQAGI AGALLGGLQN
FGAGLAALTM SLVPMGGQLS IGLLSALMVL LVIVALHYAR DQNDSHHTLL PQNS
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