| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1932 |
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| Symbol | |
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| ID | 4252506 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 2302774 |
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| End bp | 2304315 |
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| Gene Length | 1542 bp |
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| Protein Length | 513 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638118543 |
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| Product | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase |
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| Protein accession | YP_734063 |
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| Protein GI | 113970270 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
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| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.202235 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000117708 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACGCACT CGATAAACAA GGATCAGTTA CAGGCATCAT TCACTCGCCC CAAGCTTAAG
GGATTACTTT TAGGCAGCAT GTTAAGTATT CTGCTGCCAA CCCAAGCGAT TGCAGCAATT
CATCCGCTGG ATGAGTCGAC ATTTGCCAAG CAAATCGCCG ACATTGCCCC GCGTCATTCG
CAAGTCGCTT TGCTGGCCCG TGATTTAAGT ACTAATACCC TGTTATACAG CCAGCAAGCC
GATACCTTAT TTATCCCCGC CAGCACGCAA AAGGTGCTGA CCGCCGTGAC CGCTATGGCC
AGCCTTGGCC CAGATTTTCG CTATGTCACT GAGCTCTGGA GTGATGCGCC CATTCGCCAA
GGTCATATTG CGGGCAGTGT TTATCTGCGT TTTAGCGGCG ATCCAACGCT GACTCAGGAC
GATCTCAAAG CCTTGTTTGC CCATCTACAA AAGCAAGGCA TAACAAGCAT TGAGGGGCAT
CTCTATCTGA TCGGGGATAA ACAGGAACAA TTACAAGCAC CTGGTTGGGT GTGGGATGAC
CTAGGGATTT GCTTTGCAGC GCCGGTATCC AGTTACATCA TCAATCAAAA CTGCGTTTAT
GGGCAGTTTG CGCCAAGCTC AGCCAAACAT GCCTCTGAGG TCAAATTAAG GGCATCCAGT
TTTGGGGTGA AAGTCAGTAG CGATGCCATA TTCTCCCCTA AAGCAGGCCA TGATTTTTGC
CAGCTCGATT TAGTACGCCT TGGCCAAAAC CAATATCATC TACGCGGCTG CTATCCCGGC
AGTGAAGCGA TACCACTGGC GATTGCCATT AGCGATCCCG AAAAATTTGC CATGGACACC
CTAACCGCGA CGCTCAAGGG GGAAATATCA CTTTCGGGGA AAGTGAAAAT AGGCAATACC
ATCCCTTCTA AGGCGAAACT GATTGCCAGC CATAGCAGCG CGCCCTTGCC TGAGCTGTTA
AAAACCATGC TGTTGAAGTC GGATAACCTC ATCGCCGACA GTTTGTTTAA GCGCGTGGGG
CAAAATTATT ACAAAGCCCA AGGCAGCTTT ACCCATGGTG CTGCGGCTAT GCGCCATATT
CTGACTGAGC TTGGGATTGA TTTAACCAAC GCTAATATTG TCGATGGTTC AGGGCTTTCT
CGCTATAACC TGTTGAGCGC AAAACAGTTA GCCGATGTAC TGGCGCTCAT TTACCAAGAT
GCACGCTTTC ACACCCTCAT TGACAGTTTG CCCGAGGCCG GTGTCAGCGG CACACTGCAA
TATCGCTTGG GATATACTAA ACCGCCCTTA AAACATCTAG TGTTTGCCAA GACCGGCTCG
ATGCAGGGCG TTGCCAATTT AGCTGGCTTT ATGCGTTTAG CGCAGCAACG GGATATTCTA
TTTGTGGTAC TTGAGAACGG CATTAGCCCC GAAACTAAAA AACAGCGTAA ACCCGCCTTT
AGCGCCGATT TTTTAACTCG GCTGCTGAGC GCTGTCGAAA CTCAGACTCA GACCAGCCAA
ACAACGACCA CAGAGCTGAG CACCGTTAAG TTAAGTGATT AA
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| Protein sequence | MTHSINKDQL QASFTRPKLK GLLLGSMLSI LLPTQAIAAI HPLDESTFAK QIADIAPRHS
QVALLARDLS TNTLLYSQQA DTLFIPASTQ KVLTAVTAMA SLGPDFRYVT ELWSDAPIRQ
GHIAGSVYLR FSGDPTLTQD DLKALFAHLQ KQGITSIEGH LYLIGDKQEQ LQAPGWVWDD
LGICFAAPVS SYIINQNCVY GQFAPSSAKH ASEVKLRASS FGVKVSSDAI FSPKAGHDFC
QLDLVRLGQN QYHLRGCYPG SEAIPLAIAI SDPEKFAMDT LTATLKGEIS LSGKVKIGNT
IPSKAKLIAS HSSAPLPELL KTMLLKSDNL IADSLFKRVG QNYYKAQGSF THGAAAMRHI
LTELGIDLTN ANIVDGSGLS RYNLLSAKQL ADVLALIYQD ARFHTLIDSL PEAGVSGTLQ
YRLGYTKPPL KHLVFAKTGS MQGVANLAGF MRLAQQRDIL FVVLENGISP ETKKQRKPAF
SADFLTRLLS AVETQTQTSQ TTTTELSTVK LSD
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