| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1915 |
|---|
| Symbol | nrdB |
|---|
| ID | 4252489 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 2281020 |
|---|
| End bp | 2282150 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638118526 |
|---|
| Product | ribonucleotide-diphosphate reductase subunit beta |
|---|
| Protein accession | YP_734046 |
|---|
| Protein GI | 113970253 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0208] Ribonucleotide reductase, beta subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.560465 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.0000000902277 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCTACT CTACTTTTTG CCAAACACCG AACGATGCCA CCCGTGAACC TATGTTTTTC
GGACAATCGG TTAACGTCGC TCGTTACGAC CAACAAAAAT ATGAAGTGTT TGAAAAACTA
ATTGAAAAGC AGCTGTCTTT CTTCTGGCGC CCAGAGGAAG TCGACGTGAG CCGCGATAAG
ATCGATTACA ACTCACTGCC AGATCATGAA AAGCATATTT TTATTTCGAA CCTGAAATAC
CAAACACTGC TCGATTCTAT CCAAGGTCGT TCGCCCAACG TGGCATTTCT ACCGCTGGTA
TCGCTGCCAG AGTTAGAAAC CTGGATTGAG ACTTGGTCAT TCTCGGAGAC CATCCACTCG
CGCTCATACA CTCACATTAT TCGCAATATC GTGAACGATC CTTCAGTGAT TTTTGACGAT
ATCGTGGTGA ATCAAGAGAT CCTGCGCCGC GCGACTGACA TTGCCGAATA TTACGATCAC
TTAATTAAAC TCACGCAGGT TTACCACCTG TTAGGTGAAG GCACCCATGT GATCGATGGC
GAGCCGATTG AAGTCAACAC TCGCACGCTA AAGAAAGCGT TGTACCTGTG CATGATGTCA
GTTAACGCCC TCGAAGCGAT TCGCTTCTAC GTCAGTTTTG CCTGCTCATT CGCATTTGCT
GAGCGCAAGC TCATGGAAGG TAACGCGAAA ATTATTCGTC TTATCGCCCG TGACGAAGCG
CTGCACTTAA ACAGTACTCA GCATATTTTA ACCATTATGC AGGCCGGCAA AGACGATCCT
GAAATGGGTG AAATTGCAGC AGAGTGCCAA CAGGAAGCCT ATAACCTGTT CCTAAAAGCC
GCCGAGCAAG AAAAAGAATG GGCGAAATAC CTGTTCAAAG ACGGCTCGAT GATCGGTCTC
AACGAGCAGA TCCTCTGCCA ATACGTTGAG TACATCACTA ACCAACGGAT GAAGTCCGTT
AACCTGCCAC AGCCTTATGC AGAGCAGTCT AACCCACTGC CTTGGATGAA GAACTGGTTA
GAGAGTGATG CAGTACAAGT GGCACCACAG GAAGTCGAAG TGTCATCTTA TCTTGTCGGT
CAAATCGATT CGGCCGTCGA CAGTGATGAA TTCCTCGATT TCGATCTCTA A
|
|---|
| Protein sequence | MTYSTFCQTP NDATREPMFF GQSVNVARYD QQKYEVFEKL IEKQLSFFWR PEEVDVSRDK
IDYNSLPDHE KHIFISNLKY QTLLDSIQGR SPNVAFLPLV SLPELETWIE TWSFSETIHS
RSYTHIIRNI VNDPSVIFDD IVVNQEILRR ATDIAEYYDH LIKLTQVYHL LGEGTHVIDG
EPIEVNTRTL KKALYLCMMS VNALEAIRFY VSFACSFAFA ERKLMEGNAK IIRLIARDEA
LHLNSTQHIL TIMQAGKDDP EMGEIAAECQ QEAYNLFLKA AEQEKEWAKY LFKDGSMIGL
NEQILCQYVE YITNQRMKSV NLPQPYAEQS NPLPWMKNWL ESDAVQVAPQ EVEVSSYLVG
QIDSAVDSDE FLDFDL
|
|---|
| |