| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1909 |
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| Symbol | |
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| ID | 4252483 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 2274508 |
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| End bp | 2276352 |
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| Gene Length | 1845 bp |
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| Protein Length | 614 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638118520 |
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| Product | signal peptide peptidase SppA, 67K type |
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| Protein accession | YP_734040 |
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| Protein GI | 113970247 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
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| TIGRFAM ID | [TIGR00705] signal peptide peptidase SppA, 67K type
[TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000036932 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000182105 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCCGCTA ACCCATCGTT TTTCAAGAGA ATATGTTTAT TTATATGGAA CACCCTTAAC
GGGATCCGTA AATTCATACT CAACCTGATT TTTTTTGGCT TCCTCGCCAT CATCCTCATT
ACTATTGGCA GCAGTGAAGA TATTCAGGTC GAAGATAACT CAGCATTGGT GCTTAATCTG
GCGGGTTCGA TTGTCGATCA AAAACAGCAG GTCGATCCGA TTGAAGCCGC ACTTAAGCAA
GGCAATAACG GCAGTAGCGA TGGCGAAATC CTGCTGGCAG ATATTATCTA TGTGATTGAT
AACGCGACGC ACGATAACAG GATCAGCACC ATAGTCTTAG ACTTGGCCGA GCTGAAACGC
GCAGGGATCA GCAAATTACA ATCCATCGGT GATGCCCTAA ATCGTTTTAA AGAAAGCGGC
AAAAAGGTGG TGGCAATTGG AAACTACTAC GAGCAAAACC AATACTTTCT TGCCAGCTTT
GCCGATACCA TTTACCTCAA TCCCCAAGGT AGCGTCGCCC TCGATGGCCT AAGTATGTAT
AACCAATACT TCAAGTCTGC CCTCGAGAAG CTCAAGATAA AGGCCCACAT TTTCCGCGTC
GGCACCTTTA AATCCGCAGT AGAACCATAC ATGCGTGACG ATATGTCGGA TGCGGCCAGA
GAAGCCAGCA GCGCCCTACT CGCCGATGTA TGGCAGAGTT ACACTCAAAC TGTGGCACAA
AATCGCCAAA TTGATGCCAA TACCTTAGTG CTCGACTCGG CAAATTACCT CGCGCAACTC
GATAAGGCCG AAGGCGACTC CGCCACTATG GCCATCAATA TGAAATGGGT CGATACCCTA
GCGACCGATG AAGAGTTCCG TAAAGTCATG CTAGATAGCG TGGGTAAAGA GAAGTCGGGT
GACAGCTTTA AACAAGTCAG CTTTTACGAC TATTTAACCT TAGTGACACC TCTGCCAAGC
TTCGTAGAAC AAGACAGTGT CGGCATTATC GTTGCCAGCG GCACTATTTT AAATGGCAGC
CAACCCGCCG GCCAAATCGG TGGTGATAGC ACCGCAGAGC TGTTACGCAA GGCGCGATTT
GATAAACATA TCAAAGCGCT AGTTCTTCGC GTCGACAGCC CTGGTGGTAG CGCCTTTGCC
TCGGAGCAAA TTCGCCAAGA ATTACTCGCC CTCAAAGCGG CGGGTAAACC TGTGGTGGTG
AGTATGGGTA GCCTTGCGGC GTCCGGTGGC TATTGGATTT CGGCCAGCGC CGATTATATC
TTCGCAACCC CAACCACACT GACGGGTTCT ATCGGGATCT TTGGGATGAT CACCACTTTC
GAAGATTCAC TCGCCAGCTT AGGCATCCAT ACCGATGGCG TATCGACCTC AGAATGGGCA
GGTTTGTCAG TGACTCGTAC CCTCTCGCCA CAAATCGAGT CGGTTATCCA GCGCCATATC
GAGCGTGGCT ATTTAGACTT TATCTCTCTG GTCGCTAAGG AACGTAAAAT GACCTTAGAA
CAAGTGGATA GCATCGCCCA AGGCCGTGTG TGGAGTGGTA AAAAAGCCCT AGAGTTAGGT
TTAGTGGATG AGCTTGGCGA TATCGACCAA GCCGTTGCTA AAGCCGCTAA ACTCGCGGAT
TTAAGTTTGT TCGACACCCG CTTAATTGAG CAAGAGCTCA CGCCTGAGCA GCGTTTTGTG
CAGCAAATGT TTGCCTCTGT TTCAGCCTAC TTACCCGCGT CACTCAGCCA TTCAACACTG
CTTGAGCAAA TGCTGGCTCA ATGGACTGGC AACTTAAAGA CCATCGCCGC CTTTAACGAT
CCTAACCATG TGTATGTGTA TTGTGACAGC TGCGTGATCA ACTAA
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| Protein sequence | MSANPSFFKR ICLFIWNTLN GIRKFILNLI FFGFLAIILI TIGSSEDIQV EDNSALVLNL
AGSIVDQKQQ VDPIEAALKQ GNNGSSDGEI LLADIIYVID NATHDNRIST IVLDLAELKR
AGISKLQSIG DALNRFKESG KKVVAIGNYY EQNQYFLASF ADTIYLNPQG SVALDGLSMY
NQYFKSALEK LKIKAHIFRV GTFKSAVEPY MRDDMSDAAR EASSALLADV WQSYTQTVAQ
NRQIDANTLV LDSANYLAQL DKAEGDSATM AINMKWVDTL ATDEEFRKVM LDSVGKEKSG
DSFKQVSFYD YLTLVTPLPS FVEQDSVGII VASGTILNGS QPAGQIGGDS TAELLRKARF
DKHIKALVLR VDSPGGSAFA SEQIRQELLA LKAAGKPVVV SMGSLAASGG YWISASADYI
FATPTTLTGS IGIFGMITTF EDSLASLGIH TDGVSTSEWA GLSVTRTLSP QIESVIQRHI
ERGYLDFISL VAKERKMTLE QVDSIAQGRV WSGKKALELG LVDELGDIDQ AVAKAAKLAD
LSLFDTRLIE QELTPEQRFV QQMFASVSAY LPASLSHSTL LEQMLAQWTG NLKTIAAFND
PNHVYVYCDS CVIN
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