Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1903 |
Symbol | |
ID | 4252477 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 2267956 |
End bp | 2270523 |
Gene Length | 2568 bp |
Protein Length | 855 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638118514 |
Product | TonB-dependent receptor |
Protein accession | YP_734034 |
Protein GI | 113970241 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000110647 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0000976809 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATCAAAA GAACCAAAGT TGCATCAGCT ATTAATTTAG CTGTCGTTAG CTCAATTGCT GCAGGTACCT TTGTTGCATC AAGCGCATTT GCAGCCGAAG AGACTGCAAA AGTTGAACGT ATTGAAGTCA CGGGTTCACG TATTCAACGT CAAGATATGG AAACAGCTTC TCCTGTTACC GTTATTGATG CAGCTGCAAT CAAAGCCGAA GGCTTCACCT CTGTAGACCA AATGCTACAA GTTCAAACTT CAATGGCAGG TGCTGCGATT GGTTCAACCA CTAACAACGG TGCAGACGGT GTTGCTCAAG TTGACTTACG TGGTATGGGC TCGCAACGTA CACTCGTACT ATTAAACGGC CGTCGCATGG TGAACTCAGG TTCAGGTGCT GACAGTGCAG TGGATTTAAA CTCTATCCCT GTAGCTATGA TCGCTCGCGT TGAAATCCTG AAAGACGGTG CCTCAGCGGT ATACGGTTCT GATGCGATCG CCGGTGTAGT GAACATCATC ACTAAGAAAG ATTTCGATGG TTTCCAATTA GACTTCAACG GTAGCGGCAC CGACAAGGGT GACGGTCAAA ACGGTGATGT CAGTGCATTA TATGGTTTCA ATACCGATGG TGGTAACTAC ACCTTTGGTG CGGCTTACTC AGATCGTCGT GGTGTGATCC AATCGGACCG TAGTTGGACT AAACCTGGTG CTAGCTCTTT TGTACCAAAT GGCGGACTTG TCGGTAACGT TTTAGATGAA AATGGCCAGC CTGTTCTGGA TGAAGATGGT GTCAATGAGA AAGAAGTTAA AATTAATCAA GGAGGAAATT GGAGTCCATT AGAAAATGGT TACAATTTCA CCCAAGATAG TTTTTATCAG ACTCCGAGTG AAAGACGTAG CTTGTTTGCA AATATGACGC AAGAGCTTGG TAATGATGTG GTGTTAACTG CTGATGCCTT ATACACAAAC CGTCGCTCTA ACCAACAGTT AGCTCCACAA CCTGCTGATA TTATGCTGAA TGTTTGTGGT CAAGGTGTTG ACCCAACAAA ATGTGTTACG TTGGATAACT CAATGGCTAC AGCTGGCATT GTTGCAGATG ATGGCATGGT TAACTATCGC CGTCGTATGA ATGATGTTGG ACCACGTATT TATTCTCAGG ATACTGATAC TTGGCGTTTA TCTGGTGGTT TAGCGGGTAC TTTAGATGTA CATACAGGTA TGAACTGGGA CGTTACTTAT ACCTATGGTA AAAACCAGGC TAAAACAGCT GTTGCAAACT CTATTAATGC TAAAGATGTT GCTAATTCAA TATATGCTGA CCAAGATGTT TGGTTTAGCG GTGCAGAATT ATCAAACCAA ATTGGTAATG ATGTAAGCTA CACAGAAAAG GCAAACGGCG GTAATGAGCA ACAAACACTG TCAGCTGGTC TGAACGGTGA GTTATTCGAC CTGAGCGCTG GTGCTGTAGG TTTCGCTATC GGTGCAGAGT ACCGTCGTGA AAGTGGCTTC TATAATCCAG ATCCTATTGT TGTTGCGGGT GAAAGTACTG CTTCACAACA AGATCCAACC GATGGTAACT ACAACGTAAT TTCTATTTTC CAAGAAGTTA GCGTGCCTTT TACTGAAAAA CTGACGGGTG AATTTGCACT GCGTTTAGAT GATTACTCAA CCTTTGGTAA AGCGACCACT TGGAAAATCG GTTTAACATA TAATGCAACA GACGAGCTGA TGGTTCGTAC CGTAGCAGCA ACAGGTTTCC GTGCTCCGAG TGTAAGTGAG CTTTATGGCG GCAACTCAGG TTCATTTGAT TACCTAACAG ATCCTTGGGG TAAAGAATTA GATGAACAAA TTGAAGTTAA CTATATATCA GATGCAGATC TTAAGCCTGA AGAATCAGAC TCTTACACTG CTGGTTTAGT GTACTCACCA AGCTACCTCG ATGGTATGTC AGTGACACTT GACTACTGGC GCTTCAAAGT AACTAATGCA ATCGCTCGTG CAAACACACA AGATGGTTTA GATGCGTGTT TCGCGGGTGA TACTGCAGCT TGTGATCAAT TCAATATTGG CGCAGGTGGA GATTTAACAA ACTTGTCGAA TGCGTTAACT AACGTAGGTT CACAAGACAC TAGTGGTATC GACTTCAACT TAGCCTACAA CTTCGAGCTG ATTGGCTTAG ATTGGAAAGT AAACAACGAT ACGACTTACT TAGTGAAGTT CGAGCAGGAT GGTGAAGAAT ACACTGGCAC TATCGACGGT AACTTCGGTG CTTATGCTCG CGTACGTAAC AACTTCAGTA TCTCTGCAGG TCAAGACGAT TGGAACGTAA TGTACTTCAA CCGTTTCATC GGCGACATGC GTGACCTGAG CAAAGGTTAC AATGTAGGTG ATATCCTTTA TCACAACATT TCTGGTACTT ATCATATCAA TGATATGGCA ACTATTAGCT TCGGTGTGAA GAACTTTACT GATGAAAAAC CATTGACCGT TTCTAACGGT AGTGATGGCG GTACTGTTCC AGAAGTTTAC GACACTATCG GCCGTACCAT TTACGGTGGT GTGACAGTTA AGTTCTAA
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Protein sequence | MIKRTKVASA INLAVVSSIA AGTFVASSAF AAEETAKVER IEVTGSRIQR QDMETASPVT VIDAAAIKAE GFTSVDQMLQ VQTSMAGAAI GSTTNNGADG VAQVDLRGMG SQRTLVLLNG RRMVNSGSGA DSAVDLNSIP VAMIARVEIL KDGASAVYGS DAIAGVVNII TKKDFDGFQL DFNGSGTDKG DGQNGDVSAL YGFNTDGGNY TFGAAYSDRR GVIQSDRSWT KPGASSFVPN GGLVGNVLDE NGQPVLDEDG VNEKEVKINQ GGNWSPLENG YNFTQDSFYQ TPSERRSLFA NMTQELGNDV VLTADALYTN RRSNQQLAPQ PADIMLNVCG QGVDPTKCVT LDNSMATAGI VADDGMVNYR RRMNDVGPRI YSQDTDTWRL SGGLAGTLDV HTGMNWDVTY TYGKNQAKTA VANSINAKDV ANSIYADQDV WFSGAELSNQ IGNDVSYTEK ANGGNEQQTL SAGLNGELFD LSAGAVGFAI GAEYRRESGF YNPDPIVVAG ESTASQQDPT DGNYNVISIF QEVSVPFTEK LTGEFALRLD DYSTFGKATT WKIGLTYNAT DELMVRTVAA TGFRAPSVSE LYGGNSGSFD YLTDPWGKEL DEQIEVNYIS DADLKPEESD SYTAGLVYSP SYLDGMSVTL DYWRFKVTNA IARANTQDGL DACFAGDTAA CDQFNIGAGG DLTNLSNALT NVGSQDTSGI DFNLAYNFEL IGLDWKVNND TTYLVKFEQD GEEYTGTIDG NFGAYARVRN NFSISAGQDD WNVMYFNRFI GDMRDLSKGY NVGDILYHNI SGTYHINDMA TISFGVKNFT DEKPLTVSNG SDGGTVPEVY DTIGRTIYGG VTVKF
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