| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1888 |
|---|
| Symbol | |
|---|
| ID | 4252462 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 2246944 |
|---|
| End bp | 2249097 |
|---|
| Gene Length | 2154 bp |
|---|
| Protein Length | 717 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638118499 |
|---|
| Product | SrpA-related protein |
|---|
| Protein accession | YP_734019 |
|---|
| Protein GI | 113970226 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.528264 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGTTA TGGCGCTGTC AGCACAAATT GGCGCGCCAT CCACTTCGTT TTTGGGCGCG
GATAAGTCTA TTGAGCCAGC AAAAGGCGTT AAACCTCAAG GCGGACAGAC TTATCAAGGG
GGAAATGGTC AGGCGGTTGC AACGCTCTTT GCTTCAACCA CTAACCTAAA TGCGCCAAAA
CTCGAAGCGA GTGGGGCACT TGCACCATCA CTAAGCAGCC TCGGGGCTGT GATGGACCAA
GCTATGCCAA TCAGTACGAC ACCGCCCGCT TCATTGACTG ATGTCAAACC TGCTAGTCCT
CCGATTTCAT CTCATGTTGA TACTGGAGCT GTTCAGAAGG CTTTCACCGC TCTCGGTGGA
AATGCCAAGG CACAACTCCA TTCTAACGAG ACTGTTTCGA CTCCGTTAGA TACAAGCCTT
CATGCTTCAA CTAGCTTTAG CTTACTCACA GGCCCTCGCT CGATTGGCGG AATGAGGGAA
GGGCAAATTG CTGTCATAGC CACACTGCCA TCAGTGTCAA CCTTAGGGGC ATCGGATGTA
GGTTTTAGCG CCCCAAGTGG TGCTGTTACG CCTTTTTCTC CTCCGGCCCC AAGCCTTGCG
GCCACAATTG CCACGACTGG CAGCAGTGTT GACTCCGCGA GTGCGGGGTT AGCCAATATT
TTCTCTACAT CTACGGCGGT CGCTACGAAT ATTGGCTCAA CCGGGTCAAA TAGCGTTCAT
CCAAATGCCT CAAGTGCAGT GGTGACTCCT TTTGCGACTG AATTTGCAGC TGCAGATGCG
ACAGGCGATG CGTCACATTC CAGCGCTTCA GCTTTTGCCA ATTCAAATGC GCTTCCTGAT
AGCAATCAAT CCAGTGGTGT AAGCGAGCAG TTGAGCCGTG TTTTTAGTGA ACCCTCGGGT
GAGCGCGGCC AAGTCGGTGC TGGAATAACC CCAAATGCTC AAACGCAACA ACAGCAAACT
CAAACAGAAC AAATTCAAGC TCAAGTTGCG CGAGATGAAC AAGCGAAGCA GGCAAGGGCG
CAGGCGGTAC AAGAGCAGGA GCAAAAGCAG CAAGCGTTAG CCGAGGTTTT TGCCAAAGCA
GAGCAAACTA AACAAGCTCA GCAGACACAG GATGAGCAAA CTCGTCAGCA AGACGTAGCG
AAGGAGCAAG TTAAACAGGC GCAAGAAAAG GCAATTGAGC AGCAAAAAGC CCAAGTGGAC
GCATTAAAAT CAAGGGACAC AGAAGTCAAA GCCCATGAGC ATGCTCACGC CAGTGTGGGC
GGTCAATATG CCCAAAGCCC CAGTTTCAAG TATGAAAAAG GTGCCGATGG TCAACGCTAT
GCGACTGACG GTGAGGTGCA AATCGATGTG TCGATAGTGC CTGGCGATCC TCTGGCGACC
ATCAATAAGA TGAAGCAAGT CTATGCAGCG GCGATGGCAC CCGTGGAGCC TTCTTCGGCG
GATATTCGTG TTGCCGCAGA AGCGCTGCAG AAAATGAATG AGGCCAAGGC GAAACTTGCA
GAGGAACGTC AGCAGCAGAT TGTTGATCAA CCGACAACGG AAACGCTGAT TGGCGCCGAG
GCACAGATTG AAGGTTTACC ACCGCTTAAG GAGCGGCAAA TTCAAGTCAC AGGCAAGATT
GATGCTAATG GCAATATCAC TGCGCCCCAA GAGGAACCAT CGGCGCCTGT AACAGACGTG
ATTGATAAGA TTAAACAAGC CATTGCGGCG CAGGTTGCAT CGAGTAAAAC CTCAGATGCA
GCAAGTACCT CTGAAGTTGA TAAGACAGAG TCCATCGAGC CGCCAACGGC GACCTTAGCG
TTCGGCGCTG TATCGAATAA GGATGAAGCG CCAGAGGTTG CTATGCAGCG GTTGGCGTCG
TCTCGCGACA ACAAGGGTAC ATCGAGTCAC ACAACAAACG GCAGTAATGC GGTGCGTTTT
TATGGCTCGG TCGCCGTGGC AACGCTGGCA AGTAAGGGAA ACACTGAAGT TAATCAATCA
GGTTCGGATG ATGTTTCACT TGAGCGGATA AGTGATTCGT CTAGCTACGA GCCAGACAGT
GTTATGTCCA ATGGATTGGC GCTTGAGTCC TCAAACGGTC AAAATACACG CGGCCTGTTC
AATCCTCAAA CCTTAGCACT GCACCGTCCA CGCTTCTTAG ATGTGAATGT CTAG
|
|---|
| Protein sequence | MSVMALSAQI GAPSTSFLGA DKSIEPAKGV KPQGGQTYQG GNGQAVATLF ASTTNLNAPK
LEASGALAPS LSSLGAVMDQ AMPISTTPPA SLTDVKPASP PISSHVDTGA VQKAFTALGG
NAKAQLHSNE TVSTPLDTSL HASTSFSLLT GPRSIGGMRE GQIAVIATLP SVSTLGASDV
GFSAPSGAVT PFSPPAPSLA ATIATTGSSV DSASAGLANI FSTSTAVATN IGSTGSNSVH
PNASSAVVTP FATEFAAADA TGDASHSSAS AFANSNALPD SNQSSGVSEQ LSRVFSEPSG
ERGQVGAGIT PNAQTQQQQT QTEQIQAQVA RDEQAKQARA QAVQEQEQKQ QALAEVFAKA
EQTKQAQQTQ DEQTRQQDVA KEQVKQAQEK AIEQQKAQVD ALKSRDTEVK AHEHAHASVG
GQYAQSPSFK YEKGADGQRY ATDGEVQIDV SIVPGDPLAT INKMKQVYAA AMAPVEPSSA
DIRVAAEALQ KMNEAKAKLA EERQQQIVDQ PTTETLIGAE AQIEGLPPLK ERQIQVTGKI
DANGNITAPQ EEPSAPVTDV IDKIKQAIAA QVASSKTSDA ASTSEVDKTE SIEPPTATLA
FGAVSNKDEA PEVAMQRLAS SRDNKGTSSH TTNGSNAVRF YGSVAVATLA SKGNTEVNQS
GSDDVSLERI SDSSSYEPDS VMSNGLALES SNGQNTRGLF NPQTLALHRP RFLDVNV
|
|---|
| |