| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1882 |
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| Symbol | |
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| ID | 4252456 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 2241762 |
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| End bp | 2243459 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638118493 |
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| Product | thiamine-phosphate pyrophosphorylase |
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| Protein accession | YP_734013 |
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| Protein GI | 113970220 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0351] Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
[COG0352] Thiamine monophosphate synthase |
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| TIGRFAM ID | [TIGR00097] phosphomethylpyrimidine kinase
[TIGR00693] thiamine-phosphate pyrophosphorylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCCTG CTAAAGATAT TAGCCAGGTG GCGCCTAAAC CTATCGTCTG GACCATTGCG
GGTTCAGACA GCGGTGGCGG CGCGGGGATC CAAGCCGACT TAGCCACCAT CAAGGATTTG
GGCGGCCATG GATGCAGCGT GATCACCACG TTAACGGCCC AAAGTTCGGT GGCGGTGGAG
TTAGTTGAGC CTGTGAGTGA GGCAATGTTA CTCACACAGC TCTCGACCCT GTTAGCCGAT
CTACCGCCTC AGGCGATTAA GATTGGTTTA CTCGCAAATC AGCAGCAACT GCACTTAGTT
GCCGACTGGT TGGCTGGTTT TAAAACCCAA TTTCCACTCG TCCCCGTTAT TCTCGACCCT
GTGATGGTTG CAAGCTGTGG TGATGAGTTA GGTGATAAGA GCACTGCAAG TAAACCTCTG
GATTTTACTC CCTTTAAGGG CTTGATTAGC CTGATAACGC CGAATGTGCA GGAGTTGGCA
AGGCTAACTG CCGCCACAGA CAAACAAGCG TCAGCAATAC ACACAAAAGC AGAATTCGCC
GCTGCGGCAA TGCAACTCTC AGCGCAATTA GCGTGCAGCG TATTAGCCAA GGGCGGCGAT
ATTGATTTTG CGGCTCAAGC AAGTGATGGC ATTAACACCA GTGATCTCTT AAGCGATCAC
AAAAGCGATA TCACAAGTCA TCATATCGCC ACAGATAATC AGCGTTTGGC GGAAGATTTG
TTGATTTGTC ATCAGGTTAC TGGCTGTTCA CCGCTTGACG CTAATGGCGG TTTTTGGCTG
AGCAGTGTGC GGATAAACAC GCGCCATAAC CACGGCAGTG GTTGTACTCT GTCTTCGGCC
ATCGCCTCGG TGTTGGCCTC TGGCTTTGTA TTGCAGGATG CGGTTGTGGT AGCAAAAGCC
TATGTCAATC AAGGCTTAAC TTATGCAGAG GGGATTGGCC AAGGCCCAGG GCCACTGGCG
CGTACCGCTT GGCCGCACAA TTTAACGGCG TATCCTCACG TCACTGCTTA TTCTCAAAAC
AGCTTGAGTG AATCCAGTGA TTTGCAATGC GGCGCGTTTA ATCGCCTTGA TCCTGACTTA
GGGATTTATC CAGTTGTTGA TAACTTACTG TTACTCGACC AGTTATTGGC GGCAGGCGTG
AAGACGGTAC AGCTCAGGAT AAAGTCTAAT GCGCTAAAGT CTAATGTGCT GGCGTCGGAC
GAACTTGAGG CACAAATCCA AACCGCGATT GCCTTAGGTA AGCATTATGA TGCGCAGCTT
TTTATCAATG ATCATTGGCA GTTAGCGATA AAGCATGGCG CATTTGGGAT CCATCTCGGC
CAAGAAGATC TGGCGGTAAC GGATCTTAAC GCCATTCATG CAGCAGGACT GGCGCTTGGC
ATCTCGAGCC ACGGTTATTT CGAGTTGCTG CGTGCCCATC AACATGCGCC ATCGTACATC
GCCCTTGGGC ATATCTTCCC GACGACCACC AAGCAAATGC CATCGGCGCC GCAGGGATTA
TGTAAACTCA CTCATTATGT TGAGCTGTTA AATGCGCACT ATCCCTTAGT GGCAATTGGC
GGCATAGGAC CTTCGAATCT TGACCAAGTC AAAGCGACTG GGGTGAGCAA TATTGCCGTG
GTGCGGGCGA TTACCGAAGC AAATGATCCA GTAATGGCCT ATGCCGAATT GACTCGGGCT
TGGGAGTCAA GCCTATGA
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| Protein sequence | MTPAKDISQV APKPIVWTIA GSDSGGGAGI QADLATIKDL GGHGCSVITT LTAQSSVAVE
LVEPVSEAML LTQLSTLLAD LPPQAIKIGL LANQQQLHLV ADWLAGFKTQ FPLVPVILDP
VMVASCGDEL GDKSTASKPL DFTPFKGLIS LITPNVQELA RLTAATDKQA SAIHTKAEFA
AAAMQLSAQL ACSVLAKGGD IDFAAQASDG INTSDLLSDH KSDITSHHIA TDNQRLAEDL
LICHQVTGCS PLDANGGFWL SSVRINTRHN HGSGCTLSSA IASVLASGFV LQDAVVVAKA
YVNQGLTYAE GIGQGPGPLA RTAWPHNLTA YPHVTAYSQN SLSESSDLQC GAFNRLDPDL
GIYPVVDNLL LLDQLLAAGV KTVQLRIKSN ALKSNVLASD ELEAQIQTAI ALGKHYDAQL
FINDHWQLAI KHGAFGIHLG QEDLAVTDLN AIHAAGLALG ISSHGYFELL RAHQHAPSYI
ALGHIFPTTT KQMPSAPQGL CKLTHYVELL NAHYPLVAIG GIGPSNLDQV KATGVSNIAV
VRAITEANDP VMAYAELTRA WESSL
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