| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1862 |
|---|
| Symbol | |
|---|
| ID | 4252436 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 2212971 |
|---|
| End bp | 2216078 |
|---|
| Gene Length | 3108 bp |
|---|
| Protein Length | 1035 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638118473 |
|---|
| Product | acriflavin resistance protein |
|---|
| Protein accession | YP_733993 |
|---|
| Protein GI | 113970200 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.00635777 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCTTT CTACCTTTGC ACTGAGGCAA AAAACCTTTG TTATCTTTTT TACTGTGCTG
TCGATCATCG CGGGAATTTA TTCCTACTTT GATTTGGGCA AGTTGGAAGA TCCGTCTTTT
ACCGTAAAAA GTGCGGTGAT TGTGACCCTC TATCCTGGCG CCAATGCTAA GGAGGTGGAG
CAGTTAGTGA CGGATAAGAT TGAAACTAAG CTAGAGGAAA TGGAATCCCT CTGGAAGCTA
AGGTCGTTAT CCCGTCCGGG CAGTTCGATG ATCTTTGTCG ATCTCAAGGA AAAAGTGAAC
TCTGAGGCCT TGCCACAGCA GTGGGATTTG ATGCGTCGTA AAGTGGAAGA CGTCAAATTA
GAGCTGCCAG TACAAGCACA GATCAGCATA GTCCAAGATG AATTCTCGGA AGTCTACGGC
ATGTTGTTCG CCGTCTATGG CGACAATATG GAAATGGCGG AGCTAAAGGA TCATGCGCGG
GAATTACAAC GTCGCATTAA AGCTGTCGAT GGGGTGAAAA AAGTCCAGCT GCACGGTATC
AATGAGCAGG TGGTGAATAT CCGTATTTCA GAGGAGCGTC TGGCGGAGGC AAACCTCACC
ATGTTGCAGT TGGTTGAGCA ATTGCATAGC CAGAATATGC CTATCGTGGC TGGGGATTTC
GACCTCGGCA TCGAAAACCT GCGTGTGGAA CAGGGCGATA CCTTTAAAAG CATTGACGAT
ATTCGCAATC TTAGTATTCA AACGGGCTTA AATGGGCTGC AGTCGGCGGT GATCCGTTTA
GGGGACATTG CCGATGTATC GATGGAGTAT CAAGATCCCG CTACCACGCT TAGTCGCTAT
AACGGCCAGC AAGCCATCAC CTTAGCCGTG AGTCCGGTGA ATGGCATTAA TGTGGTGAGC
ATTGGTGATA CCTTAAAGAG TGTATTGACC GATTATCAAA CCAAACTGCC TGATGGTGCA
GGCATTGGGG TGATCGCCTA TCAGCCAGAA GAAGTCGAAA AATCAGTCAG TAACTTTATC
GTTAACTTGA TTGAGAGTGT GGTCATTGTG GTTGTGGTGT TGCTGATCTT TATGGGTTGG
CGTAGCGCGG CGATTGTGGG CGTCAGCTTG CTGATAACCA TTTTATTCAC TCTGGTGTAT
ATGAAACTGA CCAGTGTGGA TTTGCAACGG GTCTCCCTCG GCTCCTTCGT GTTAGCACTA
GGCATGCTGG TGGATAACGC CATTGTGATT GTCGACTTAT TCCAAGCCAA GATTAAGCAG
GGCATTGAAC GTACCCAAGC GGTTATCGAC AGCATTAAAG AGATGGCCAT GCCACTCCTT
GGCGCCACAG TGATCGCTGC CATGGGTACG GCGCCCGTGT TGCTGTCTCA AACGGATTCG
GCCGAGTTTT CACTCTCGAT AGTGCAAGTG CTTTGTAGTT CGCTGTTGCT CTCATGGATT
ATTGCCATGG TGATAACACC GCTGATGTGT TGGTACTTCT TAGGCGATTC CAGCAATGCC
GAAACTGAAA ATGCTAAGCC ACCTTCACGT TATGGGCTGA TGTATCAGCG AGCGGTGGAG
TGGGTCGTGG AAAATCCCAA GAAGACCATA CTCTTCACCG TGCCTTTACT GCTGTGCACT
TTACTGGTCA CGCCATTGTT GAAAGTGAGC TTTATGCCAT CGTCCGATCG CCCCATTTTG
TTCCTCGATT ATTGGCTACC CAATGGTGGG CGCATCGAGC AGACATCGGC GGATATGCGA
AAAGTGGAGC GTTGGTTATT AGCACAACCC GAGGTGACGA GTATTTCCAG CTATGTGGGG
GAAAGCGCAC CGCGGTTCTC GGTCACCGTC GAGCCAGAGC CATTGGATTC GAGCTATGGC
CAAATCCTGA TCAATATGCG CAATTTTGAC GATATCGAAA CCTTAATCCA ACAGGGCGAT
GCCTGGCTAG CTAAGGAGTT TCCCTATGCT GAACCTCGAT TTAGGGAGCT AAAGCTAGCG
ACTAAGGATA AATATTCGAT TGAAGCGCGC TTTATCGGCC CCGATCCGCA GGTGCTACAT
GGCTTAGCCG ATCAGGCCAA GGACATCATG CGTCAACATC CGAACTTAAA ATACGTTCGT
GATGACTGGC GTCAAGAGAG CAAAGTCATG ACACCGCAGG TGGATATGCA CGCCGCCCGT
TTAGCCGGTG TGACACGTAC CGATATTGCC AATGCCATCA ATCGGGTAAC CGAAGGCACC
AATATTGGCA CTATGCGACA TGGTGACGAC TTGATCCCGA TTAAGCTGCG TAGCGCCGAT
GCTTCATTAG CGCATTTTGA GAATATTCCC GTGCGTTCGT TACTCGGCAC ACACAGCGTG
CCTATGGGGC AGGTGGTGGA GAGTATCGAG ATCCAAGGTG AAGAAAGCAT GGTGTGGCGT
CGTAATCGTT TGCCAGCGAT CACCGCTCAA GCGGGTGTGA GTGGCGATAC GGCTTCGAAT
GTGCGCCAGA GTATTGCGGC CGATATCGAG GCCATCCCAC TGCCCGAAGG TTATCGACTG
GAGTGGGGCG GCGAATATTA CGATGAGCAG CGCTCGATTG ATGACTTAAT GCAACAAAAC
CCTAAGGCCA CGTTGTTGAT GGTGGTGATT TTGGTGGCGA TGTTTAACGC ATTCCGACAA
CCACTCATCA TTATGATTAC TCTGCCATTG GCGGCGATAG GTATCGTCTG GAGTTTAGTG
TTACTGGACA AACCCTTCGG CTTTATGGCG ATTGTCGGCA TGATCTGTTT GTCGGGAATG
ATCATCAAAA ATGGCATTGT GTTAATGGAT CAGATTGAAC TCGAACGACG TAATGGTCGC
AGAATCGCCG AGGCTATTAA GGCGGCGACG CTCAACCGCA CCATGGCGAT TTCGATGGCG
GCCCTGACAA CGGCTCTCGG GATGATCCCT TTGTTGACCG ACAGACTGTT TGACCAAATG
GCCGCGACCA TTATTGGCGG TTTGACCGCA GCGTCCGTGC TGTCCTTATT TGTGATGCCT
GCCTTGTATC GACTCTTTTA TCGTCGGGAT GAGCGCGAGG AAGAGGCGTT ACTCGACGCA
CAAACGGACA ACACACATTC GGTTATTCGC AGCGCCAAAG AGGTCTGA
|
|---|
| Protein sequence | MSLSTFALRQ KTFVIFFTVL SIIAGIYSYF DLGKLEDPSF TVKSAVIVTL YPGANAKEVE
QLVTDKIETK LEEMESLWKL RSLSRPGSSM IFVDLKEKVN SEALPQQWDL MRRKVEDVKL
ELPVQAQISI VQDEFSEVYG MLFAVYGDNM EMAELKDHAR ELQRRIKAVD GVKKVQLHGI
NEQVVNIRIS EERLAEANLT MLQLVEQLHS QNMPIVAGDF DLGIENLRVE QGDTFKSIDD
IRNLSIQTGL NGLQSAVIRL GDIADVSMEY QDPATTLSRY NGQQAITLAV SPVNGINVVS
IGDTLKSVLT DYQTKLPDGA GIGVIAYQPE EVEKSVSNFI VNLIESVVIV VVVLLIFMGW
RSAAIVGVSL LITILFTLVY MKLTSVDLQR VSLGSFVLAL GMLVDNAIVI VDLFQAKIKQ
GIERTQAVID SIKEMAMPLL GATVIAAMGT APVLLSQTDS AEFSLSIVQV LCSSLLLSWI
IAMVITPLMC WYFLGDSSNA ETENAKPPSR YGLMYQRAVE WVVENPKKTI LFTVPLLLCT
LLVTPLLKVS FMPSSDRPIL FLDYWLPNGG RIEQTSADMR KVERWLLAQP EVTSISSYVG
ESAPRFSVTV EPEPLDSSYG QILINMRNFD DIETLIQQGD AWLAKEFPYA EPRFRELKLA
TKDKYSIEAR FIGPDPQVLH GLADQAKDIM RQHPNLKYVR DDWRQESKVM TPQVDMHAAR
LAGVTRTDIA NAINRVTEGT NIGTMRHGDD LIPIKLRSAD ASLAHFENIP VRSLLGTHSV
PMGQVVESIE IQGEESMVWR RNRLPAITAQ AGVSGDTASN VRQSIAADIE AIPLPEGYRL
EWGGEYYDEQ RSIDDLMQQN PKATLLMVVI LVAMFNAFRQ PLIIMITLPL AAIGIVWSLV
LLDKPFGFMA IVGMICLSGM IIKNGIVLMD QIELERRNGR RIAEAIKAAT LNRTMAISMA
ALTTALGMIP LLTDRLFDQM AATIIGGLTA ASVLSLFVMP ALYRLFYRRD EREEEALLDA
QTDNTHSVIR SAKEV
|
|---|
| |