| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1857 |
|---|
| Symbol | |
|---|
| ID | 4252431 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 2205418 |
|---|
| End bp | 2206563 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 638118468 |
|---|
| Product | succinyl-diaminopimelate desuccinylase |
|---|
| Protein accession | YP_733988 |
|---|
| Protein GI | 113970195 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0000183592 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACGCACG CTTCGAACAG CCACCCAGTT ACCGAACTGA CTAAAGAATT AATTGCCCGT
CCTTCGGTCA CCCCACTGGA TGAAGGCTGC CAAACCCTGA TGGCCGAACG TCTTGCCGCC
ATTGGCTTTA ATATTGAGCC CATGGTCTTT GAAGACACCA CCAATATGTG GGCGCGTCGC
GGTAATGAAG GCCCAGTATT TTGTTTTGCC GGCCATACCG ATGTAGTGCC CGCGGGCGAT
TTAAGCCGCT GGCATACCCC GCCTTTTGAG CCAACCATTA TCGACGGTTA CCTCTATGGC
CGCGGCGCGG CAGACATGAA AGGCTCGCTG GCGGCGATGA TCGTCGCGAC CGAACGTTTT
GTGGCTAAGC ACCCAAATCA TCCCGGCTCG ATTGCGTTTT TAATCACTAG CGATGAAGAA
GGCCCATTTA TCAATGGCAC CACACGGGTT ATCGATACCC TAGAAGCCCG TAATGAAAAA
ATCACTTGGG CGCTGGTGGG CGAACCCTCA TCGACCCTAA AACTCGGTGA TGTGGTCAAA
AATGGGCGCC GTGGCAGCCT GACCGCCAAC CTAACCGTGA AGGGCATTCA GGGCCATGTA
GCCTATCCGC ACCTTGCGGA TAACCCAATC CACAAAGCCG CGCCGTTTTT AGCCGAGTTA
AGCCAAACCC ATTGGGATAA TGGCAACGAA TTCTTCCCGC CCACCAGCAT GCAAATCGCC
AATATTAATG GCGGCACGGG CGCATCGAAC GTGATCCCAG GCACCCTAGA GGTGATGTTT
AACTTCCGTT ATTCGACCGA AGTGACCGCC GAGATATTAA TCGAGCGTGT GGAAGCCCTA
TTAACCGCCC ACGAACTGGA TTATGACATC AGCTGGACCT TCAACGGCCT GCCATTTTTA
ACCGGCGAAG GCCCACTGTT AGACGCGACT CGACATGCTA TACGTCAGAT CACTGGCTAT
GATACCGATC CGCAAACCAC GGGCGGCACC TCTGATGGAC GCTTTATTGC ACCAACGGGC
GCCAAAGTGT TGGAACTCGG TCCAGTGAAC GCCACTATCC ATAAAGTGAA CGAGTGCGTG
AAAATCGACG ATCTCGAGCA GTTAGCCCTG TGCTACGAAG TGATTTTGGA ACAGTTACTG
TGTTAA
|
|---|
| Protein sequence | MTHASNSHPV TELTKELIAR PSVTPLDEGC QTLMAERLAA IGFNIEPMVF EDTTNMWARR
GNEGPVFCFA GHTDVVPAGD LSRWHTPPFE PTIIDGYLYG RGAADMKGSL AAMIVATERF
VAKHPNHPGS IAFLITSDEE GPFINGTTRV IDTLEARNEK ITWALVGEPS STLKLGDVVK
NGRRGSLTAN LTVKGIQGHV AYPHLADNPI HKAAPFLAEL SQTHWDNGNE FFPPTSMQIA
NINGGTGASN VIPGTLEVMF NFRYSTEVTA EILIERVEAL LTAHELDYDI SWTFNGLPFL
TGEGPLLDAT RHAIRQITGY DTDPQTTGGT SDGRFIAPTG AKVLELGPVN ATIHKVNECV
KIDDLEQLAL CYEVILEQLL C
|
|---|
| |