| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1839 |
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| Symbol | |
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| ID | 4252413 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 2185410 |
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| End bp | 2189291 |
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| Gene Length | 3882 bp |
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| Protein Length | 1293 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638118450 |
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| Product | ATP-dependent helicase HrpA |
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| Protein accession | YP_733970 |
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| Protein GI | 113970177 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0262766 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGTTTTGA ACTCTGACAA ACATCCGCTA TCGAGCGACT TTCTCAAGCA GTGCTTTCAA
AGTGATGCCT CGCGGATCCG CCGCCGTTTA TTTAAGCTCA ATAAAGAAGC CGATTCTGAT
AAGAAAACCC AAGAGTTAGC CAAACTTGCC GAGCAGGCGC AAGCAGCGTT CGAAAAGGTC
GAGCAGCGCC TTAAGGCGCG CCCTAAAATC CAATACCCAG ATAATCTGCC CGTTAGCGGC
ATGCGCGAAG AGATAGCTAA AGCTATCAGT GAAAACCAAG TGGTGATCAT CGCGGGTGAA
ACCGGTTCAG GTAAAACCAC TCAGCTCCCG AAAATCTGTT TAGAACTGGG CCTTGGTAGT
CGCGGCTTTA TTGGTCATAC CCAACCGCGG CGTTTAGCGG CGCGCAGCGT GGCGACACGT
GTTGCTGAAG AATTACAAAG TCCGCTCGGC GAAGTGGTGG GCTTTAAGGT GCGTTTTGCC
GATGCCTTAA AGAGTGAATC CTATATCAAG CTGATGACTG ACGGGATTTT ACTGGCGGAG
CTCACCTCGG ACCGCTATTT AGATCAATAC GATACAATCA TTATCGACGA GGCGCACGAG
CGCAGCCTCA ACATCGATTT TATCTTGGGT TACCTCAAGC AAATTTTAAA AAAACGCCCC
GATCTTAAGA TCATTATCAC CTCGGCGACT ATCGATGTTG AGCGTTTTTC TAAGCATTTC
AATAATGCAC CTATTATCGA AGTCTCTGGC CGGACTTATC CGGTGGAAAC CCGTTATCGC
CCGTTGGTGC AAGATACCGA AGCGGATCTC GACCAAATCG AAGGGATTTT TGCGGCCGTT
GACGAATTAG TCGCCGAAGG CTTGGGCGAT ATTCTGATCT TTATGAACGG CGAGCGCGAA
ATTCGTGATA CCGCCGAGCA GCTTAATCGT CGCAATTACC GCGATACCGA GATTTTGCCG
CTGTATGCGC GCCTCTCCTA CGGCGAGCAG TCCAAGGTAT TCAGCAGCCA TACTGGGCGT
CGCATCGTGC TTGCCACGAA CGTGGCGGAA ACGTCGCTGA CAGTCCCTGG TATTCGTTAT
GTCATTGACC CAGGGACTGC GCGGATCAGC CGTTACAGTT ATCGCACTAA GGTGCAGCGC
CTGCCCATCG AGCCCATTTC ACAGGCCAGT GCCAATCAGC GTCAAGGTCG CTGCGGTCGT
GTTGGCCCGG GTATTTGTAT TCGCTTATAC GATGAGGCGG ATTTTAACAG TCGTCCCGCG
TTTACCGATC CCGAAATCCT ACGCACAAAC TTAGCCTCGG TGATTTTGCA GATGCTCGCC
ATCGGCCTTG GCGATATTGC GGCGTTCCCC TTTATTGAGC CGCCCGATCC GCGCCATATT
CGCGATGGCT TCTTACTGCT TGAGGAATTA CAAGCCGTTA AGCAGCAGAA GGGCAATATT
GTGTTAACGC CGCTTGGGCG TCAGCTATCA CAGATCCCGG TGGATCCGCG TTTAGCGCGT
ATGGTGGTGG AGAGTCATCA GCAGGGGTGC TTGCAGGAAG TGTTAGTGAT TGCCGCGGGT
CTGTCGATTC AAGATCCCCG CGAGCGTCCC ATGGATAAAA AGCAGGCGTC CGATGAGGCC
CATCGCCGTT TTGCCGATCC CCATTCAGAT TTTGTCAGTT GGGTGAACCT ATGGCAGCAC
TTAAAAGAGC AGCAAAAGGA ATTATCCGCC AGCCAGTTCC GTAAAAAATG CCGCGACGAG
TACTTAGCCT ACCTGCGTGT GCGTGAATGG CAGGATTTAT ATACTCAGCT AAAACAAGCG
GTTCACGATT TAAAGTGGCG CTTAAACGAG ACACCAGCCA ACTACGATGC GCTGCACCGT
GCGTTGTTAT CGGGCCTGCT GAGTCATATC GGCTTTAAGG ACAATAACAA CGAATACTTA
GGCGCGCGCA ATCGTAAGTT TTTTGTGTTC CCAGGTTCAC CGCTGGCGAA AAAAGGCCCG
AAATGGATCA TGGCGGCGGA GCTCACCGAA ACCTCTAAGC TGTTTGCTCG CTGCTGCGCC
AAAATTGAGC CAGAGTGGCT CGAGCCGTTA GCGACGCATC TGATTAAGAA GAATCACCTC
GAGCCGCATT TTGAGGCAAA ACAGGGCAGT GTGATTGCCT TTGAAAACCA AGTGCTCTAC
GGTTTGACCG TAGTACATCG CCGCCGCGTG CAATACGGGC CGATTAATCC TGTTGAAGCG
CGGGAAATCT TTATCCGTAG CGCGCTTGCC GAAGGGCAAT TACAGACCAA AGAAGCCTTC
TTTATCGCTA ACCAAAAGCT ATTAGAGGAT GTCGAAGCGC TCGAGCACAA GTCCCGCCGC
CGCGATATTT TGGTCGATGA ACAAGTGTTG ATGGACTTTT ACGAGCCGCG CATTCCCGAA
GGCATCTATA ACGCGCCTAA GTTCTTTAGC TGGTGGAAGG AAGCACGCCG TACTCAACCC
GATTTACTCG ATTTTAATAA GTCACTATTG ATGCAGCGCA GCGCCGATCA TATCTCGGCT
CTCGATTTCC CCGATACTTG GCACAAGGGC AATATTCGTT TGCAACTGAG TTATCACTTT
GATCCTGCGG CGAGTGATGA TGGTGTCTCT GTGCATATTC CTGTGGCGCT ACTCAATCAA
ATCGATGATA CGGATTTCGA TTGGCTGGTG GCAGGGATGC GTGAGGAGAA ATGCGTCGCC
CTGATTAAGT CTTTGCCTAA GGGACTAAGG CGTAACTTTG TGCCTGCGCC CGATTATGCC
CGAGCCTGCG TACAGGCGAT GCAGCCCTTT AGCGCCAGTT TACTCGACGC CATGTGCAAA
CAGCTTTTGC GAATGAGTGG TACGCGCGTC AATCCCGAAG ATTTTGATGT CACGCAGATG
CCAGCGCATT TGCAGATGAA CTTTAAGATT GAGGACGACA AGGGCAAATT AGTGGCACAG
GGGCGGGTAC TCGATACCTT AAAGGCCGAG TTACAGGGCG TGGTCGCTAA GGCGATTCGT
CAAGTGGCGG ATAAGGGCAT TGAAAAGGAA GCGCTCACCG AGTGGTCCTT TGGCGACTTA
CCGAAACAAT TTGAACAGCG TAAGGGCAAC TACCAAGTGC GGGCGTTCCC TGCACTGATT
GACAATAAAG ACTCGGTTGC CATCAAATTA TTTGATGATG AATTTGAGGC GCAGGCAGCG
CATCGTCAAG GTCTACGTCG TCTGCTGTTA CTCAACATTC CATCGCCGGT AAAACACCTG
CAACAGGCGC TGCCCAACAA GGCAAAACTG GCGATGTATT TCAATCCATT TGGCCAAGTG
CAAATTCTGA TTGATGACAT CATTGCCGCA GCGGTGCAGC AATTGCTCGA TGAAAAGGCG
CTGGATGTGC GCGATGCCGC TCAATTCGAG CAGGCCAAGG ATTGGGTGCG CCAAGAGCTG
AATCCAACGG CTGAGCAAAT CGCCCTAAAA GTGGAGCAGA TTTTGACGCT CTATCAAGGC
ATTAAAAAGC GGACTAAGGG TAAAATTAGC TTAGATATAG CTTTTGCGAT GAGTGATATT
CAAAGCCAAT TAGACCAATT AGTATTCAAG GGATTCGTCG AAGCTTGTGG TTGGAATCGC
TTAGCGGATG TGGCGCGTTA CTTAAAGGCG ATAGAAACCC GTATCGACAA GTTGCCCGTG
GATCCGACCC GTGACCGTTT GCATATGCAG AGTATCACTA AAGTGCAGGA GGCTTTAGCG
GCGCAGCTTG CCAAGGTGCC ACGTTCACAA CCCGTGCCTG CGGCACTGAT TGAAGCCCGT
TGGATGATTG AAGAATACCG GGTGTCTTGC TTTGCACAGG CGCTGGGAAC GGCTTATCCG
ATCTCGGAGA AGCGTATCTT AAACCATATT CTGCTGAGTT AA
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| Protein sequence | MVLNSDKHPL SSDFLKQCFQ SDASRIRRRL FKLNKEADSD KKTQELAKLA EQAQAAFEKV
EQRLKARPKI QYPDNLPVSG MREEIAKAIS ENQVVIIAGE TGSGKTTQLP KICLELGLGS
RGFIGHTQPR RLAARSVATR VAEELQSPLG EVVGFKVRFA DALKSESYIK LMTDGILLAE
LTSDRYLDQY DTIIIDEAHE RSLNIDFILG YLKQILKKRP DLKIIITSAT IDVERFSKHF
NNAPIIEVSG RTYPVETRYR PLVQDTEADL DQIEGIFAAV DELVAEGLGD ILIFMNGERE
IRDTAEQLNR RNYRDTEILP LYARLSYGEQ SKVFSSHTGR RIVLATNVAE TSLTVPGIRY
VIDPGTARIS RYSYRTKVQR LPIEPISQAS ANQRQGRCGR VGPGICIRLY DEADFNSRPA
FTDPEILRTN LASVILQMLA IGLGDIAAFP FIEPPDPRHI RDGFLLLEEL QAVKQQKGNI
VLTPLGRQLS QIPVDPRLAR MVVESHQQGC LQEVLVIAAG LSIQDPRERP MDKKQASDEA
HRRFADPHSD FVSWVNLWQH LKEQQKELSA SQFRKKCRDE YLAYLRVREW QDLYTQLKQA
VHDLKWRLNE TPANYDALHR ALLSGLLSHI GFKDNNNEYL GARNRKFFVF PGSPLAKKGP
KWIMAAELTE TSKLFARCCA KIEPEWLEPL ATHLIKKNHL EPHFEAKQGS VIAFENQVLY
GLTVVHRRRV QYGPINPVEA REIFIRSALA EGQLQTKEAF FIANQKLLED VEALEHKSRR
RDILVDEQVL MDFYEPRIPE GIYNAPKFFS WWKEARRTQP DLLDFNKSLL MQRSADHISA
LDFPDTWHKG NIRLQLSYHF DPAASDDGVS VHIPVALLNQ IDDTDFDWLV AGMREEKCVA
LIKSLPKGLR RNFVPAPDYA RACVQAMQPF SASLLDAMCK QLLRMSGTRV NPEDFDVTQM
PAHLQMNFKI EDDKGKLVAQ GRVLDTLKAE LQGVVAKAIR QVADKGIEKE ALTEWSFGDL
PKQFEQRKGN YQVRAFPALI DNKDSVAIKL FDDEFEAQAA HRQGLRRLLL LNIPSPVKHL
QQALPNKAKL AMYFNPFGQV QILIDDIIAA AVQQLLDEKA LDVRDAAQFE QAKDWVRQEL
NPTAEQIALK VEQILTLYQG IKKRTKGKIS LDIAFAMSDI QSQLDQLVFK GFVEACGWNR
LADVARYLKA IETRIDKLPV DPTRDRLHMQ SITKVQEALA AQLAKVPRSQ PVPAALIEAR
WMIEEYRVSC FAQALGTAYP ISEKRILNHI LLS
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