| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1831 |
|---|
| Symbol | |
|---|
| ID | 4252405 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 2174007 |
|---|
| End bp | 2175635 |
|---|
| Gene Length | 1629 bp |
|---|
| Protein Length | 542 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638118442 |
|---|
| Product | peptidoglycan binding domain-containing protein |
|---|
| Protein accession | YP_733962 |
|---|
| Protein GI | 113970169 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2989] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.809625 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCCTG TGAGTCGATT AACGCTAAAT CCTAATACAT CCAACCGCAG CTTTAGTTCA
CTTAAGCGCT GGCCACTCGG TGCATTGTTG ATGGGACTTT CGCTTGCAGT CATAGAATCC
TATGCCGCCG AGCCACTGGT AACAGCACCT CTAAGCGTTG AACCACAAAC GGTTGAGCTG
CCCGCTCCTC CGCCTTCCGC TGAAGTCGCT GACCCAGACA CTGCAGTTGA GCTAATTCTA
GGGCAAACCT TACTCTTGAG TCTTGCCGAT GTTAGCCCTG TTTTTAGCGC CAATTATCAA
CAGTTGAGCC AGTGGCAGCA TAGAGTACTG GATAGCGAAG AGCGGACGAA GCTTCGCCAA
ATGCAGCTGC AACTGGATAA CTATTGGCGG TATCTCGATA CCCAAGCTGA ATGCATCACG
CCGTGCAGAT CGGCTGCATT GATGCCAACA GATGCGTATT TTCGCGCTGT GGTTCTCAAG
CTGAAGCAAT TGATGGCGTT AGCGGAATCC TCTTCGTGGG AGACGCTCAT CCTCGAAGAT
AAATTAAGCC CGGGGCAAGA GAGTCCTCTC ATCGCATTAA TTGTGCAGCG TCTTTTTCTA
TTAGGCTTTC TGGCAGATAA GCCAAGTCCA GTTTCCGAGA CAGCAGCTGA TCCAGAAGCG
CTTTCGCCAG ACGTAACGAC TCACCCTGAA TCAAAGGCGT ATCCAGCCCA AGGTTCTGCT
GACAAGAATC CCATGCTTTA TAACGATGAA CTCGTTGCCG CAATTAAAGT CTTTCAAACT
CAACATGGCT TACAAGCAGA TGGGGTGATA GGTAAGCAGA CCCTGTATTG GCTTAATCAA
TCTCCCTATG CTCGGGCGCA GTTACTGGCG AAAAACACCC TTAGGCAGCA GATTTTTACT
CGCACCTTAC CTGCAAGCTA TCTGGTGATA AATGTCCCGG CATTTGAGTT GCAATTCGTC
GAAGCGGGGA AGGTTATCCT CAATTCAAAA GTAATAGTGG GCAAAGCATC GCGGCCAACA
CCGCTGCTAA GTAGTCATAT CTCCAGCGTG GTGGTCAATC CACAGTGGCG CGTGCCACGC
ACCATAGTGC GGCGCGATAT CTTGCCCCAT ATACGCCAAG ATGGTCATTA CCTGCAGGAC
CGCGGGTTCG ATGTTTACGA CTATGACGGC GCGCGAGTCG AACATTCGCC ACAGGAGTGG
CAAGAGTTGG CGTCCAGCCA TTTTCCCTAT CGTTTAGTGC AACGCCCCGG GGCGAAAAAC
GCCTTAGGTC GGTATAAATT TCATTTCGAC AACAGTTTTA GTGTGTATTT GCACGGAACT
TCTGAGCCAA GTCTCTTTAA AAAGACCGAT AGGGCCTTAT CATCGGGTTG CATTCGGGTT
GAAAAGGTCG AGGAGCTGGC CCGCTGGTTT CAGACTCACT TAGTTAAAGA TACGCGCCTT
TGGGACAAAT TAACGCCTAA TACCACTCAA TCCCAATGGT TTGCGTTATC AGATACCATG
CCTGTCTACA CGGTTTATTG GACAGCATGG CTTGATGATG CTGGGCAAAT TCAATATCGC
AATGATATTT ATCACTTAGA AGCTGAGTTT ACCCAGGCGG TGCCTGCATC AATTTTTTAC
ATTCTATAA
|
|---|
| Protein sequence | MMPVSRLTLN PNTSNRSFSS LKRWPLGALL MGLSLAVIES YAAEPLVTAP LSVEPQTVEL
PAPPPSAEVA DPDTAVELIL GQTLLLSLAD VSPVFSANYQ QLSQWQHRVL DSEERTKLRQ
MQLQLDNYWR YLDTQAECIT PCRSAALMPT DAYFRAVVLK LKQLMALAES SSWETLILED
KLSPGQESPL IALIVQRLFL LGFLADKPSP VSETAADPEA LSPDVTTHPE SKAYPAQGSA
DKNPMLYNDE LVAAIKVFQT QHGLQADGVI GKQTLYWLNQ SPYARAQLLA KNTLRQQIFT
RTLPASYLVI NVPAFELQFV EAGKVILNSK VIVGKASRPT PLLSSHISSV VVNPQWRVPR
TIVRRDILPH IRQDGHYLQD RGFDVYDYDG ARVEHSPQEW QELASSHFPY RLVQRPGAKN
ALGRYKFHFD NSFSVYLHGT SEPSLFKKTD RALSSGCIRV EKVEELARWF QTHLVKDTRL
WDKLTPNTTQ SQWFALSDTM PVYTVYWTAW LDDAGQIQYR NDIYHLEAEF TQAVPASIFY
IL
|
|---|
| |