Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1822 |
Symbol | |
ID | 4252396 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 2162698 |
End bp | 2163834 |
Gene Length | 1137 bp |
Protein Length | 378 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 638118433 |
Product | hydrogenase (NiFe) small subunit HydA |
Protein accession | YP_733953 |
Protein GI | 113970160 |
COG category | [C] Energy production and conversion |
COG ID | [COG1740] Ni,Fe-hydrogenase I small subunit |
TIGRFAM ID | [TIGR00391] hydrogenase (NiFe) small subunit (hydA) [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.249477 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACACAC ATGCAGCCCT CTATGAACAG GGAAAGGCGC GCTTAGATGC ACTGCGCCAA TTCGCTCCCC GTCAACAGCA AACATTAACC GAAAAATTGC AACAACACGG CATTACCCGC CGTGACTTTA TGAAGTGGAG CGCCATGGTG ACGGGTATGC TCGCCCTACC GCTGCCCTTT AGTAACTTAG TCGCCGAAGC TGCCGAACTC GCCGACCGTG TACCCTTAAT CTGGTTACAC ATGGCCGAAT GTACTGGCTG CTCCGAATCC TTAGTGCGCG CCGATACGCC CAATCTCGAT TCGCTGATCT TCGATCATAT CTCGTTGGAA TATCACGAAA CCCTCATGGC CGCTGCTGGC TGGCAAGCAG AGGAAAATCT CGAGCACGCC CTAGAGACCT ACAAGGGTCG TTACCTGCTC GCCGTTGAAG GCGCGATACC GACCGCCAAT AACGGCAGCT TCTTAACCGT TGGCTGTAAA GGCCATACTG GCTTAGAAAT TATCAAACAT GCCGCCGAAG GTGCTGCGGC GATTATTTCT GTCGGCACCT GCGCTTCCTT CGGTGGTGTG CAAGCCGCCT ACCCCAACCC GACTGGGGCA AAAGGGGTAC ACGAAGTTGT GAGCAAGCCT GTGATCAACT TAGGTGGCTG TCCACCGAGT GAGAAAAACA TCGTCGGCAC CCTGATGTAT TTCATCATGT TCGGCAAATT ACCTGCGCTG GATATGTTCA ACCGGCCGAA ATGGGCTTAT GGCGCACGGG TACACGATAA CTGTGAACGC CGCGGCCGTT TCGATGCCGG TGAGTTCGTT GAAGAGTTTG GCGATCACGG TGCGAAGGAA GGTTACTGCC TCTACAAAGT GGGTTGTAAA GGACCTTATA CCTATAACAA CTGCCCCACA GAGCGCTTTA ACCACCATAC CAGCTGGCCA GTGTTAGCGG GCCACGGTTG TATGGGCTGC TCAGAACCTA ACTTCTGGGA TGATATGGCC GACTTTGAAA AACCCCTTGG CCGTCAACTA CTCCATGGAT TGGATGCGAC CGCAGACACA GTCGGTGCGG TGATTTTAAG CGCAACCGTC GTCGGCATTG GAGCCCACGC CGTTGCCAGT ATTTTTGCCA AGCCGCTGGA GGAATAA
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Protein sequence | MDTHAALYEQ GKARLDALRQ FAPRQQQTLT EKLQQHGITR RDFMKWSAMV TGMLALPLPF SNLVAEAAEL ADRVPLIWLH MAECTGCSES LVRADTPNLD SLIFDHISLE YHETLMAAAG WQAEENLEHA LETYKGRYLL AVEGAIPTAN NGSFLTVGCK GHTGLEIIKH AAEGAAAIIS VGTCASFGGV QAAYPNPTGA KGVHEVVSKP VINLGGCPPS EKNIVGTLMY FIMFGKLPAL DMFNRPKWAY GARVHDNCER RGRFDAGEFV EEFGDHGAKE GYCLYKVGCK GPYTYNNCPT ERFNHHTSWP VLAGHGCMGC SEPNFWDDMA DFEKPLGRQL LHGLDATADT VGAVILSATV VGIGAHAVAS IFAKPLEE
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