| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1817 |
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| Symbol | |
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| ID | 4252391 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 2155296 |
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| End bp | 2157806 |
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| Gene Length | 2511 bp |
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| Protein Length | 836 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 638118428 |
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| Product | (NiFe) hydrogenase maturation protein HypF |
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| Protein accession | YP_733948 |
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| Protein GI | 113970155 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0068] Hydrogenase maturation factor |
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| TIGRFAM ID | [TIGR00143] [NiFe] hydrogenase maturation protein HypF |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGATGC AGCCAGATAA GCGAAGAATA CCGAGATTGA AAAAAGCCAC CTCACCCGCC
AATCAAACCG AGCAACTCGA GCGCCGCCAA TTGCATATCA CCGGCATAGT GCAAGGTGTG
GGCTTTCGCC CCTTTGTTTA CCGCTGGGCG AGTGAGCTTA AATTAACCGG CACAGTGCTA
AATAATGCCA ATGGCGTGAT GATTGAGCTG CAAGGCCCCA CCGCACACTT AGATAGCTTT
GTGCGTGAGT TAACCACCAA TCCGCCGCCG CTGGCGCGTA TCGATCAGAT TACCCAGAGT
CCGTTAGCGG TAAACCTTGA AGAGACTAGC TTCGATATTA TTCAAAGTGA TAGCCAAAGT
GATGACTCAG GCGAGCATCA TTTAGCCGCC CTGGTTGCCG TATCGGCCGA CAAGAGTACC
TGTCAGGATT GCTTAAGCGA TATGCATAAT CCGCAGGATC GCCACTTTGG CTATGCCTTT
ACCAATTGCA CCAACTGCGG CCCAAGATAC ACTATTATCA ATGCCTTACC CTACGATCGC
CATCATACGG CTATGGCAAA TTTCGCCATG TGCCCCGACT GCGCCAAGGC TTATCAAGAC
CCCCTTAATC GTAGATACCA CGCCCAGCCT GTGAGTTGCC CTAAGTGTGG CCCCGAGCTT
AGTTTAAAAA CGCCTGCAGG TGATGTTATT GCTCTTGACG CCTTGCCTCA TTCGCACGGC
AACAGCCTTG CAGTATTGTC GGCGGCGGCC GAGAAACTGG CCCAAGGGCA GATTCTTGCG
ATAAAGGGTT TAGGTGGCTT CCACTTAATG TGCGATGCAA CCAACACCCT AGCCGTCAAT
CAATTAAGGC AACGCAAGCA ACGAAAAGCT AAGCCACTGG CGGTGATGAT GCCGAGCATC
GAAGTGGCAA AACGCTATGT AACGGGCACA CAGGTAGAGT GGCAAACCTT AAGTTCGCAG
GAGCGGCCCA TAGTGCTGAT GCAGGCGCTG GATAAACACA ATCTGAGCCA TGAGATTGCG
CCTAATATCC CAAAACTCGG GATATTTTTG CCCTACACAC CGCTGCATCA TTTACTGCTC
GGGCAATTTA ACGGCCCACT GGTCGCGACC AGTGCGAATG TCTCTGGCGA GCCAATTATC
ACCGATTGTG ATGAGCTTAT CAGTCAACTA GGCCATGTGG TGGATGCCAT AGTCGATCAC
AACCGGCCCA TCCTCAACGG CTGTGATGAC AGTGTGGTGC AACTTATCCA ACCGCCAAAT
GGCTGTGCGC CACAGGTACA AGTGCTGCGT TTAGCGCGGG GATATGCACC CTTAAGCTTC
CCGTTAACCA CCCCGCTAAC GCCCCCCATA CTGGCCGTGG GCGCCCAACA AAAAAATGCC
ATTGCGTTAG GTTTTGGCTC GAATGTGTTT TTAAGCCCGC ATATTGGCGA TCTCTTTAGT
GTCAGCGCCG AGCAGTACTT CGAGCGCACT TTGGCGACCT TCGCCCGTCT GTATCATTTC
AACCCCGAGC TGATTGTCCA CGATAAGCAC CCAGACTACG CACCATCGCG CTGGGCAGAG
ACGCAGCAAC AGCACAGCCT TGATACACAA AGCCAAGACA CGCACCCAAT CCAAACCTTA
AGTGTGCAGC ATCACCATGC CCACGTATTA AGCGTGATGG CCATCAATCA ATATCAAGAG
CCAGTATTAG GCTTTAGTTT CGATGGCACA GGGCTTGGAA ACGATGGCAG CCTCTGGGGC
GGTGAAGTCT TACTCACCAC CCTTAACGGC GCAGAGCGGC TTGCCCATTT CGAGGCTATT
CCCTTGCTCG GTGGAGAACA GGCAATTAAG CAGCCAGTGC GTTTGCTGCT GGCACTGCTG
TTTCAGCAGA TGAGTCTCGA GGAAGTGCAA ACCCTTAAGT TGCCGATTCT GACCACCTTA
AGCCCCATCA CCTTAGGCAA TCTGCATCGG ATCTGGCAAA ACGGCCATGG GATTAACAGC
TCCTCGGTGG GACGCTTGTT CGATGCCCTC GCCTACGCCT TAGGCTTTAT CGACATCACC
CAATTTGAAG GCCAAGCGGG TATGTTAATT GAAGCGGCAG CAAGACGGGC CGATGCCAAA
CAACTGCCGA CGCTGATGCT CGACTTGCCC GTGGAAATCT CGGATAAGCC CAGTGATAGC
TCGATGCACG AACCGCATAT CTGGCGCAGT AGCCAACTCT TTAAACAGAT AATCACGCTG
ATTACCGAAG CGCCGCTCAC TGGCGTTCGG CAAGCGCAGT TAGCCCGCGC CTTTTTGCAT
AGTGTGGGGG ATGCCGTTTG TTGTTATGCC GCGCGCTACC CAACTCTGCC CGTAGTGCTG
TGCGGCGGCG TGTTTCAAAA CCAATATTTG CTCGAATATT GCCTCAGTAA ACTGCACCAA
CAGGGCAATA CCGTGCTGCC CAACAAACAT ATTCCCGTCA ACGATGGCGG TATCGCCCTC
GGGCAGCTTT GGTATGGAAT ACATCAAAAG GCCAATATTG AGTGCGAATA A
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| Protein sequence | MQMQPDKRRI PRLKKATSPA NQTEQLERRQ LHITGIVQGV GFRPFVYRWA SELKLTGTVL
NNANGVMIEL QGPTAHLDSF VRELTTNPPP LARIDQITQS PLAVNLEETS FDIIQSDSQS
DDSGEHHLAA LVAVSADKST CQDCLSDMHN PQDRHFGYAF TNCTNCGPRY TIINALPYDR
HHTAMANFAM CPDCAKAYQD PLNRRYHAQP VSCPKCGPEL SLKTPAGDVI ALDALPHSHG
NSLAVLSAAA EKLAQGQILA IKGLGGFHLM CDATNTLAVN QLRQRKQRKA KPLAVMMPSI
EVAKRYVTGT QVEWQTLSSQ ERPIVLMQAL DKHNLSHEIA PNIPKLGIFL PYTPLHHLLL
GQFNGPLVAT SANVSGEPII TDCDELISQL GHVVDAIVDH NRPILNGCDD SVVQLIQPPN
GCAPQVQVLR LARGYAPLSF PLTTPLTPPI LAVGAQQKNA IALGFGSNVF LSPHIGDLFS
VSAEQYFERT LATFARLYHF NPELIVHDKH PDYAPSRWAE TQQQHSLDTQ SQDTHPIQTL
SVQHHHAHVL SVMAINQYQE PVLGFSFDGT GLGNDGSLWG GEVLLTTLNG AERLAHFEAI
PLLGGEQAIK QPVRLLLALL FQQMSLEEVQ TLKLPILTTL SPITLGNLHR IWQNGHGINS
SSVGRLFDAL AYALGFIDIT QFEGQAGMLI EAAARRADAK QLPTLMLDLP VEISDKPSDS
SMHEPHIWRS SQLFKQIITL ITEAPLTGVR QAQLARAFLH SVGDAVCCYA ARYPTLPVVL
CGGVFQNQYL LEYCLSKLHQ QGNTVLPNKH IPVNDGGIAL GQLWYGIHQK ANIECE
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