Gene Shewmr4_1775 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1775 
Symbol 
ID4252349 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp2104938 
End bp2108648 
Gene Length3711 bp 
Protein Length1236 aa 
Translation table11 
GC content52% 
IMG OID638118386 
Productexodeoxyribonuclease V, gamma subunit 
Protein accessionYP_733906 
Protein GI113970113 
COG category[L] Replication, recombination and repair 
COG ID[COG1330] Exonuclease V gamma subunit 
TIGRFAM ID[TIGR01450] exodeoxyribonuclease V, gamma subunit 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGAAGT TAATCCAATC CAATCAAATG GAAGTGCTCT GTGCCCATCT TGCCGCGTAT 
TTACGCCAGC CGCTACCCGG CGCGGGGTTA TTGCAAAATG AGCATATTTT GGTGCAAAGC
CCCGGGATGT CGACTTGGTT ACGCCTTGAA ATTGCAAAAC AAAATGGTAT TGCCGCCGCG
CTGGAGTTCC CGCTACCTTC CAGCTTTATT TGGCAACTGT GCCACGATTT ACTCCCCAAT
GTCCCCAAGG AAAACGCCTT CACTAAGGCG GCAATGACCT GGAAGCTGAT GCAACTACTG
CCGCGGCTAC TGGATGAACC TTCCTTTGGG CCACTGCGCC ATTATTTGGG TCATACCTTA
GATAATCTGG AATCGAGCGC GGCTGACACC CATAGCAACC ATCAACATGG TGCCGTAAGC
GCCGATGATA TTAAGCTTTA CCAACTTTGC GGCCGCATCG CCGATATCTT CGACCAATAT
TTGGTTTACC GCCCCGACTG GATTGCCGCG TGGGAAGCCA ATGAACCGCT TGAGTCACTC
AAATTGAATG AGGAGCAAAG CTGGCAACCC ATCCTCTGGC GCGCGCTGAT TGCCTACAAT
CGCGATGAGC TGCGTCAAAG CCACTACCAC AGGGCCAATC TACATCAGGA TTTGATTGCT
GCATTGGGGG ATAGCACCAA TTCCCTCGCA AAATTGCCGC AGCGTTTATT TGTGTTTGGG
ATCTCCTCTA TGGCGCCCCA AACCATCGAT GTGCTCCACC AGCTCGCGAG CCGTATCGAT
GTGATTATCT TAAGCCTTAG CCCCTGTCAG CATTACTGGG GCGACATTAT CGACCCACGC
CATCGGGCGC GTATGGCATT GCAATATGCC GGAAAACGCC AATTAGCCGA GCAATGGGAA
GATAAACTCG AAGTCGGCAA TCCCCTACTC GCCAACAATG GCAAGATGGG CCGCGAATTA
CTCGATATGC TGCTCGAACT GCCCCCAGAG CACTGTGACT TTGGCGACGA TGTGTACTGC
GAGCCCTGCG GCGATCCTAA CGATCCCCAC GCTCGCGCCA GCATGCTAGC CGGGGTGCAA
TACGATATTT TAGAAATGCA GACACTCGAT CGCGTACTCG GGCCAGATGC TGAGCTATAT
CAAGAAGTCG CGAATCGCCG GGTATTAACA GCCGACGATG ATTCAATTCA AATCAAGAGT
TGCCACAGCC CACTTAGGGA AGTCGAAACC CTGCACGATC ATTTACTCGA CCTGCTGGAT
AGCGACAACC AACTCACGCC CAAAGACATA GTGGTAATGA TGCCCGATGT CGCCGCCTAC
GCCCCCTATA TCGATGCGGT GTTTGCAGCC AAACAGGGAC TGGAATATAT CCCCTATGCC
ATTGCCGACC GCGGCGCGGC GCAGGAATCG CCACTCATTA ATAGCTTTTT GAATTTACTC
AATATTAATC AGAGCCGTTT CGGACTGACG GATATTTTAA GCATTCTCGA AGTCCCAGCC
ATTTTGCGAC GTTTTCAGCT CGAAGAAGAC GAGCTGCCAC TCATTCGCCG CTGGTTAGAT
GAAGCAGGTG TGCGTTGGGG CCGGGATGAA CAGAGCCGCC TTAAACAGGG CGTGCCTGCT
TTCGAGCAAA ACTCCTGGGC CTTTGGTATA AAACGCTTAA TCTTAGGTTA CGCCTTAAGG
GACGATGCGC CGCTATATCA GTCATCCCCG CCGGGAATGC ACTATTTAAC GGTTGCTGGG
GTGGAGGGCC AATCGGCACA GGCCCTTGGC AAACTGTTGA ATTTTATTGA AGTCCTCGAT
GAGACCACCC AAGTATTAGC CAAGGCGCAA GCGCCCTCAC TGCGGTTACT CGAACTCACC
GAGCTGTTAA ATGCCTTTTA CGCCCCCGAT GAGGACGAGC GTGAGCAGCT GCAGGAAATT
CGCGATGCGA TTGCCGCCTT AGAGCAAGAG CTGCTTGCCG CCAGCCCAGC CGATATTGGC
CCGCAAGCCA ACGACTTAGA TTTAAGCATC GAAGTGTTGG CGCTCTGGTT TAATCAACGC
TTAACCGAGT CACGTGTCGG CCAACGATAC CTCGCGGGCA GCGTGAATTT TTGTACCTTA
ATGCCGATGC GCTCGATTCC CTTCAAGGTG GTTTGTCTGC TGGGGATGAA TGATGGTGTC
TATCCTAGGG TGCAACATCC TGTGGGCTTT GATCTGATGG CCCATTTTGG TGCGCGCAAA
GGCGATCGTT CCCGTAGATT AGATGATAGA TACCTGTTTT TAGAGGCGTT ACTCTCGGCG
CGGGAGCAGC TTTACATCAG TTATATTGGC CGTAGCGAAC GGGATAACTC GGAGCGTATT
CCATCTATGC TGGTCTCCGA GCTAATAGAA TATTGCCAGC TATGCTATTT ACCTGAATCC
CTTGCGGCAG AAGCTTCTAC TGTCAATAAC GAAGATGCCC AACAGGCATT GCTTGAGGCT
ATTGTGAGCC ATCAGCCGCT GCAACCTTTT GATCCTAAAC TGTATCAAGC AGCACTGCCG
CAAGCCCCCG CCTCCCATGG GATAAAACAG AGTTATAGCC AGCAGTGGTG TCCGCCCGAT
AGCAATAGCC AGTTGCAGCA TGGCCGATTT ATCGAAGCCC ATACCCAGAT AGTGCTCGAA
GATGACACTC TAAGTGGCAG TGATGCACAA CAGGATATTG AGCCCCTTGG CGAAGCAGAG
CATGTGGATA TCTCGGCCTT TATTCGCTTC TTTCGCAATC CCGCGCAGTA TTTCTTTAAT
CGTACCCTAA AAGTAGATTT AAACCTGAAT ATTCAAGCGG ATGATAACGA TGAGCCCTTT
AGTCTTAATG CGTTAGAGCG TTATTTATTA CAGGCTCAGC TCCTTGGCGA TGCGCTTGAG
CAAGGGCAAA ACGAGCCTAG TACTGAACTG TTACAACGCC TTAAGGCCAG TGGCAATTTG
CCAATGCAGC CCTTTGATGA TCTGCTGCTG CGCCAATACA GCCATGATAT CGCGCCGCTG
ATTGGCAGAA CCCTGTTTAT GCGCGGCGAT GTCGCTCCTC GGCATGCCGA TATTCGGCTC
AGCTTTGAGT TACCCCATCA GAATGCAGGG ACACAGTTAA AAGCCAAGCG GGTGATCCTC
GAAGGTCGAA TCGATGATAT CAGCCCTAAA GGATTGGTCA CTTGCCGACC CGGCAGTGCC
CATGGGCGGG ACATTTTAGC CTTGTATTTG CGTCATTTAT GTTTGATGGC CGCAGGAGTG
GCTCAACCTA GCTACCTGCA ATCAAGCTAT CTGCTGGATA TGGGGCATTT TCATGCCCTC
GCGCCCATTA CGCCAGCGCT TGCCCATGCA CAGCTCGCCA ACTTATTACA GCTTTTTTAT
CAGGGCCAAA TTCATCCCCT GTGTTTTATG CCAAGAACCT CACTCGCCTA TGCCAGCGCT
GGGGCGGACG AAGAGGAAGA CCCGCACCCA AGCAAAGACC CGCACAAAGC CCGGCTCGAA
GCGGCGCAAA GCGAATGGCT GGACGAGCAA GGTGAACTTG GCGAAGGCAC AGATCCCCAT
TACCAGCGGC TGTTTCATTT TCCCGACGAC TTTACCGAGG CACATTTTGG CAAGCTCGCC
GATGACATCT ATCGGCCAAT GCTTAGCCTG TACCACAAGG ATACCCTCGC CCAACTCGAG
GAATTTGCCC TGAATGAAGC CCCAACCGCC ACGACAGGGG GAGCAGACTG A
 
Protein sequence
MLKLIQSNQM EVLCAHLAAY LRQPLPGAGL LQNEHILVQS PGMSTWLRLE IAKQNGIAAA 
LEFPLPSSFI WQLCHDLLPN VPKENAFTKA AMTWKLMQLL PRLLDEPSFG PLRHYLGHTL
DNLESSAADT HSNHQHGAVS ADDIKLYQLC GRIADIFDQY LVYRPDWIAA WEANEPLESL
KLNEEQSWQP ILWRALIAYN RDELRQSHYH RANLHQDLIA ALGDSTNSLA KLPQRLFVFG
ISSMAPQTID VLHQLASRID VIILSLSPCQ HYWGDIIDPR HRARMALQYA GKRQLAEQWE
DKLEVGNPLL ANNGKMGREL LDMLLELPPE HCDFGDDVYC EPCGDPNDPH ARASMLAGVQ
YDILEMQTLD RVLGPDAELY QEVANRRVLT ADDDSIQIKS CHSPLREVET LHDHLLDLLD
SDNQLTPKDI VVMMPDVAAY APYIDAVFAA KQGLEYIPYA IADRGAAQES PLINSFLNLL
NINQSRFGLT DILSILEVPA ILRRFQLEED ELPLIRRWLD EAGVRWGRDE QSRLKQGVPA
FEQNSWAFGI KRLILGYALR DDAPLYQSSP PGMHYLTVAG VEGQSAQALG KLLNFIEVLD
ETTQVLAKAQ APSLRLLELT ELLNAFYAPD EDEREQLQEI RDAIAALEQE LLAASPADIG
PQANDLDLSI EVLALWFNQR LTESRVGQRY LAGSVNFCTL MPMRSIPFKV VCLLGMNDGV
YPRVQHPVGF DLMAHFGARK GDRSRRLDDR YLFLEALLSA REQLYISYIG RSERDNSERI
PSMLVSELIE YCQLCYLPES LAAEASTVNN EDAQQALLEA IVSHQPLQPF DPKLYQAALP
QAPASHGIKQ SYSQQWCPPD SNSQLQHGRF IEAHTQIVLE DDTLSGSDAQ QDIEPLGEAE
HVDISAFIRF FRNPAQYFFN RTLKVDLNLN IQADDNDEPF SLNALERYLL QAQLLGDALE
QGQNEPSTEL LQRLKASGNL PMQPFDDLLL RQYSHDIAPL IGRTLFMRGD VAPRHADIRL
SFELPHQNAG TQLKAKRVIL EGRIDDISPK GLVTCRPGSA HGRDILALYL RHLCLMAAGV
AQPSYLQSSY LLDMGHFHAL APITPALAHA QLANLLQLFY QGQIHPLCFM PRTSLAYASA
GADEEEDPHP SKDPHKARLE AAQSEWLDEQ GELGEGTDPH YQRLFHFPDD FTEAHFGKLA
DDIYRPMLSL YHKDTLAQLE EFALNEAPTA TTGGAD