Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1775 |
Symbol | |
ID | 4252349 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 2104938 |
End bp | 2108648 |
Gene Length | 3711 bp |
Protein Length | 1236 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638118386 |
Product | exodeoxyribonuclease V, gamma subunit |
Protein accession | YP_733906 |
Protein GI | 113970113 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1330] Exonuclease V gamma subunit |
TIGRFAM ID | [TIGR01450] exodeoxyribonuclease V, gamma subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGAAGT TAATCCAATC CAATCAAATG GAAGTGCTCT GTGCCCATCT TGCCGCGTAT TTACGCCAGC CGCTACCCGG CGCGGGGTTA TTGCAAAATG AGCATATTTT GGTGCAAAGC CCCGGGATGT CGACTTGGTT ACGCCTTGAA ATTGCAAAAC AAAATGGTAT TGCCGCCGCG CTGGAGTTCC CGCTACCTTC CAGCTTTATT TGGCAACTGT GCCACGATTT ACTCCCCAAT GTCCCCAAGG AAAACGCCTT CACTAAGGCG GCAATGACCT GGAAGCTGAT GCAACTACTG CCGCGGCTAC TGGATGAACC TTCCTTTGGG CCACTGCGCC ATTATTTGGG TCATACCTTA GATAATCTGG AATCGAGCGC GGCTGACACC CATAGCAACC ATCAACATGG TGCCGTAAGC GCCGATGATA TTAAGCTTTA CCAACTTTGC GGCCGCATCG CCGATATCTT CGACCAATAT TTGGTTTACC GCCCCGACTG GATTGCCGCG TGGGAAGCCA ATGAACCGCT TGAGTCACTC AAATTGAATG AGGAGCAAAG CTGGCAACCC ATCCTCTGGC GCGCGCTGAT TGCCTACAAT CGCGATGAGC TGCGTCAAAG CCACTACCAC AGGGCCAATC TACATCAGGA TTTGATTGCT GCATTGGGGG ATAGCACCAA TTCCCTCGCA AAATTGCCGC AGCGTTTATT TGTGTTTGGG ATCTCCTCTA TGGCGCCCCA AACCATCGAT GTGCTCCACC AGCTCGCGAG CCGTATCGAT GTGATTATCT TAAGCCTTAG CCCCTGTCAG CATTACTGGG GCGACATTAT CGACCCACGC CATCGGGCGC GTATGGCATT GCAATATGCC GGAAAACGCC AATTAGCCGA GCAATGGGAA GATAAACTCG AAGTCGGCAA TCCCCTACTC GCCAACAATG GCAAGATGGG CCGCGAATTA CTCGATATGC TGCTCGAACT GCCCCCAGAG CACTGTGACT TTGGCGACGA TGTGTACTGC GAGCCCTGCG GCGATCCTAA CGATCCCCAC GCTCGCGCCA GCATGCTAGC CGGGGTGCAA TACGATATTT TAGAAATGCA GACACTCGAT CGCGTACTCG GGCCAGATGC TGAGCTATAT CAAGAAGTCG CGAATCGCCG GGTATTAACA GCCGACGATG ATTCAATTCA AATCAAGAGT TGCCACAGCC CACTTAGGGA AGTCGAAACC CTGCACGATC ATTTACTCGA CCTGCTGGAT AGCGACAACC AACTCACGCC CAAAGACATA GTGGTAATGA TGCCCGATGT CGCCGCCTAC GCCCCCTATA TCGATGCGGT GTTTGCAGCC AAACAGGGAC TGGAATATAT CCCCTATGCC ATTGCCGACC GCGGCGCGGC GCAGGAATCG CCACTCATTA ATAGCTTTTT GAATTTACTC AATATTAATC AGAGCCGTTT CGGACTGACG GATATTTTAA GCATTCTCGA AGTCCCAGCC ATTTTGCGAC GTTTTCAGCT CGAAGAAGAC GAGCTGCCAC TCATTCGCCG CTGGTTAGAT GAAGCAGGTG TGCGTTGGGG CCGGGATGAA CAGAGCCGCC TTAAACAGGG CGTGCCTGCT TTCGAGCAAA ACTCCTGGGC CTTTGGTATA AAACGCTTAA TCTTAGGTTA CGCCTTAAGG GACGATGCGC CGCTATATCA GTCATCCCCG CCGGGAATGC ACTATTTAAC GGTTGCTGGG GTGGAGGGCC AATCGGCACA GGCCCTTGGC AAACTGTTGA ATTTTATTGA AGTCCTCGAT GAGACCACCC AAGTATTAGC CAAGGCGCAA GCGCCCTCAC TGCGGTTACT CGAACTCACC GAGCTGTTAA ATGCCTTTTA CGCCCCCGAT GAGGACGAGC GTGAGCAGCT GCAGGAAATT CGCGATGCGA TTGCCGCCTT AGAGCAAGAG CTGCTTGCCG CCAGCCCAGC CGATATTGGC CCGCAAGCCA ACGACTTAGA TTTAAGCATC GAAGTGTTGG CGCTCTGGTT TAATCAACGC TTAACCGAGT CACGTGTCGG CCAACGATAC CTCGCGGGCA GCGTGAATTT TTGTACCTTA ATGCCGATGC GCTCGATTCC CTTCAAGGTG GTTTGTCTGC TGGGGATGAA TGATGGTGTC TATCCTAGGG TGCAACATCC TGTGGGCTTT GATCTGATGG CCCATTTTGG TGCGCGCAAA GGCGATCGTT CCCGTAGATT AGATGATAGA TACCTGTTTT TAGAGGCGTT ACTCTCGGCG CGGGAGCAGC TTTACATCAG TTATATTGGC CGTAGCGAAC GGGATAACTC GGAGCGTATT CCATCTATGC TGGTCTCCGA GCTAATAGAA TATTGCCAGC TATGCTATTT ACCTGAATCC CTTGCGGCAG AAGCTTCTAC TGTCAATAAC GAAGATGCCC AACAGGCATT GCTTGAGGCT ATTGTGAGCC ATCAGCCGCT GCAACCTTTT GATCCTAAAC TGTATCAAGC AGCACTGCCG CAAGCCCCCG CCTCCCATGG GATAAAACAG AGTTATAGCC AGCAGTGGTG TCCGCCCGAT AGCAATAGCC AGTTGCAGCA TGGCCGATTT ATCGAAGCCC ATACCCAGAT AGTGCTCGAA GATGACACTC TAAGTGGCAG TGATGCACAA CAGGATATTG AGCCCCTTGG CGAAGCAGAG CATGTGGATA TCTCGGCCTT TATTCGCTTC TTTCGCAATC CCGCGCAGTA TTTCTTTAAT CGTACCCTAA AAGTAGATTT AAACCTGAAT ATTCAAGCGG ATGATAACGA TGAGCCCTTT AGTCTTAATG CGTTAGAGCG TTATTTATTA CAGGCTCAGC TCCTTGGCGA TGCGCTTGAG CAAGGGCAAA ACGAGCCTAG TACTGAACTG TTACAACGCC TTAAGGCCAG TGGCAATTTG CCAATGCAGC CCTTTGATGA TCTGCTGCTG CGCCAATACA GCCATGATAT CGCGCCGCTG ATTGGCAGAA CCCTGTTTAT GCGCGGCGAT GTCGCTCCTC GGCATGCCGA TATTCGGCTC AGCTTTGAGT TACCCCATCA GAATGCAGGG ACACAGTTAA AAGCCAAGCG GGTGATCCTC GAAGGTCGAA TCGATGATAT CAGCCCTAAA GGATTGGTCA CTTGCCGACC CGGCAGTGCC CATGGGCGGG ACATTTTAGC CTTGTATTTG CGTCATTTAT GTTTGATGGC CGCAGGAGTG GCTCAACCTA GCTACCTGCA ATCAAGCTAT CTGCTGGATA TGGGGCATTT TCATGCCCTC GCGCCCATTA CGCCAGCGCT TGCCCATGCA CAGCTCGCCA ACTTATTACA GCTTTTTTAT CAGGGCCAAA TTCATCCCCT GTGTTTTATG CCAAGAACCT CACTCGCCTA TGCCAGCGCT GGGGCGGACG AAGAGGAAGA CCCGCACCCA AGCAAAGACC CGCACAAAGC CCGGCTCGAA GCGGCGCAAA GCGAATGGCT GGACGAGCAA GGTGAACTTG GCGAAGGCAC AGATCCCCAT TACCAGCGGC TGTTTCATTT TCCCGACGAC TTTACCGAGG CACATTTTGG CAAGCTCGCC GATGACATCT ATCGGCCAAT GCTTAGCCTG TACCACAAGG ATACCCTCGC CCAACTCGAG GAATTTGCCC TGAATGAAGC CCCAACCGCC ACGACAGGGG GAGCAGACTG A
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Protein sequence | MLKLIQSNQM EVLCAHLAAY LRQPLPGAGL LQNEHILVQS PGMSTWLRLE IAKQNGIAAA LEFPLPSSFI WQLCHDLLPN VPKENAFTKA AMTWKLMQLL PRLLDEPSFG PLRHYLGHTL DNLESSAADT HSNHQHGAVS ADDIKLYQLC GRIADIFDQY LVYRPDWIAA WEANEPLESL KLNEEQSWQP ILWRALIAYN RDELRQSHYH RANLHQDLIA ALGDSTNSLA KLPQRLFVFG ISSMAPQTID VLHQLASRID VIILSLSPCQ HYWGDIIDPR HRARMALQYA GKRQLAEQWE DKLEVGNPLL ANNGKMGREL LDMLLELPPE HCDFGDDVYC EPCGDPNDPH ARASMLAGVQ YDILEMQTLD RVLGPDAELY QEVANRRVLT ADDDSIQIKS CHSPLREVET LHDHLLDLLD SDNQLTPKDI VVMMPDVAAY APYIDAVFAA KQGLEYIPYA IADRGAAQES PLINSFLNLL NINQSRFGLT DILSILEVPA ILRRFQLEED ELPLIRRWLD EAGVRWGRDE QSRLKQGVPA FEQNSWAFGI KRLILGYALR DDAPLYQSSP PGMHYLTVAG VEGQSAQALG KLLNFIEVLD ETTQVLAKAQ APSLRLLELT ELLNAFYAPD EDEREQLQEI RDAIAALEQE LLAASPADIG PQANDLDLSI EVLALWFNQR LTESRVGQRY LAGSVNFCTL MPMRSIPFKV VCLLGMNDGV YPRVQHPVGF DLMAHFGARK GDRSRRLDDR YLFLEALLSA REQLYISYIG RSERDNSERI PSMLVSELIE YCQLCYLPES LAAEASTVNN EDAQQALLEA IVSHQPLQPF DPKLYQAALP QAPASHGIKQ SYSQQWCPPD SNSQLQHGRF IEAHTQIVLE DDTLSGSDAQ QDIEPLGEAE HVDISAFIRF FRNPAQYFFN RTLKVDLNLN IQADDNDEPF SLNALERYLL QAQLLGDALE QGQNEPSTEL LQRLKASGNL PMQPFDDLLL RQYSHDIAPL IGRTLFMRGD VAPRHADIRL SFELPHQNAG TQLKAKRVIL EGRIDDISPK GLVTCRPGSA HGRDILALYL RHLCLMAAGV AQPSYLQSSY LLDMGHFHAL APITPALAHA QLANLLQLFY QGQIHPLCFM PRTSLAYASA GADEEEDPHP SKDPHKARLE AAQSEWLDEQ GELGEGTDPH YQRLFHFPDD FTEAHFGKLA DDIYRPMLSL YHKDTLAQLE EFALNEAPTA TTGGAD
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