| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1774 |
|---|
| Symbol | |
|---|
| ID | 4252348 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 2101114 |
|---|
| End bp | 2104938 |
|---|
| Gene Length | 3825 bp |
|---|
| Protein Length | 1274 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638118385 |
|---|
| Product | exodeoxyribonuclease V, beta subunit |
|---|
| Protein accession | YP_733905 |
|---|
| Protein GI | 113970112 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
|---|
| TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTAAGG TATCACCCGC TTTACCGTTA GATCCGCTCA CCCTGCCATT TGGCGGCAGT
CGCTTAATCG AGGCCAGTGC TGGCACGGGT AAAACCTATA CCATTTCAGG CCTGTATCTC
AGATTACTGC TTGGGGATGG CTTAAGCGAA TCGCTTAATT GCGAACAAAT TCTGGTCGTG
ACCTTTACCA ATGCCGCCAC CGAGGAGCTG CGGGACAGGA TTCGCCGCCG CATTCAGGTG
GCCTTTAAGT GTTTCTTAGG GCTTGAGATT AACGATCCTT TTGTGCAGGC GCTGTACGAT
AAGACCCCTG AAGCCGAGCG CGCTATCGCC CTAAGACGCT TCGATTTAGC GCTCAAATCC
CTCGACGAAG CGGCGATTTT TACCATTCAC GGATTTTGCC AACGGATCTT GGCCGATCTC
GCCTTCGAAT CATCATTGTT GTTCGAGTCG GATTTCACCT TGGACGACAG CGAATTTTTA
CACCATGCGG TACGGGATTT TTGGCGTGAA GCCTGCTATC CGCTGCCGGA GTATTTAGCC
CAAATTATTG CCAGCGAATT TGGCGATCCC GACGGATTAG TCAAGCAGCT GAGAGCCTTG
CTCGGTGCCA GTGAGGCCAA ACCGCTTAAA CCCGTGCAAC CCTTTGCTCG TTTGGCTGAG
TCCTTAAGCC AGAGTGTGCA GCGCTTTAAG CTCGCCTGGC CGCGTGGCCG CGACGCACTG
TTAGAGTTAC TTCATAGCCT GCCGCTTAAC GGTCAACGTT TTGGTAAGGC GAGCGACAAT
TACCCTAAAC TCGCGGAAAT GTTCGACCAA CTGGACAACT TCTTAGCCTT TGGTCACGGC
TTACCGCCGC TTAAAGTGCT CGAAGCACTG TCGTTATCCG AGCTTAAGCT GAATAAAGGC
GGCGTGATCC CAAGTGCGAG CGAGGCGCCG CTGCTTGATC ATATGGAGCA GTTAGCCGCG
CTGATTAACG CGATTAAACC CGCATTTCTC TATAGCGCCA AACAAGGGAT CAGCGAGCGT
TTTGCCAAGC AAAAGCAGCA GAAAAATGTA CTGACACCCG ATGATCTGCT CACCACTTTG
GCCGCAGCAA TGCAGGCCAA TCCCGACACT TTACCTAAGG CAGTGGCGAG CCGCTTCCCC
GTGGCGCTTA TCGATGAATT CCAAGATACG GATCCACTGC AATTTGCTAT TTTCTCAGGG
ATTTATCAAA CCCGTTTGGG GGTTGATACT CAAGATCCGG CGGCAGCTGA ACCTAAGCCT
CGCACGGATA GCAAATTAAG CCTGCTGATG ATTGGCGACC CTAAACAGGC GATTTATGCT
TTCCGCGGCG CCGATATTTA CACGTATATC GAGGCGCGCA GACAAACCGA GGCGCACTAT
TTCCTCGACA CTAACTATCG CTCGAGCCGC AATCTGGTGG TCGGCGTGAA TCATTTATTC
GCCCAGCATT CGGATCCTTT TATCAGCCAA TCGATTCCCT TCGATCCGGT TAAAACGCCT
GCCAGTGCGG CGGCCAAACA ACTCGTTGAG CATGCGCCCA ATAGCGCCGC GCTGCGGTTA
AAACTCTTGA GTGAAGGCGA TACGGGACTT AATAAGGCCA GTGCGCGGCA AACCTTGGCC
GAAGACACCG CCGCCGAAAT CACCCGTTTA CTGACGCAGG CCGCCAATGG TCAATGCAGC
ACGCCCAAAG GGCCATTAAT TGCCAAAGAT ATCGCGATCT TAGTACGCGA TAGAAACGAA
GCGGCCGTGA TGAAAACCGC GCTGAGCAAG CGCCAGATTG GTGCCGTCTT TTTAAGTCGC
GACAGCGTAT TTGAAACCGT CGAAGCGCGG GAAATGGCGC TCATTCTGCG TGCCTTGGCC
AGCCCCAAGG ACGAGCGCGC CCTGCGTAGC GCCCTTGCTA CCGCCCTGCT TGGTTATCGC
GCCGAGCAAA TCCATGCCTT TAACCAAGAT GAAGAGCAGC GCCAAAGACT GCTAGAGCAT
TTTTTTGAGT TGCACCAGAT CTGGCAAAAA CGCGGCATTA TGCCGGCGCT GCTTAGCCTA
GCCAATGCCA CCCAGATGGT TGCGCGGCTG CTGCATTCAC CTATTCTGCC AAGCACTGAC
CAAGCGGAGC AAGATGCGGC CGCTCAGCTT GAGGCAAGCA ATGGCGAACG TCGACTCACG
GATTTTCGCC ACTTAGCCGA GCTGTTGCAG CAAAAGGCGA CCGAAATTGA TGGGATCAGT
GCCCTGCTCA ACTGGTATGA GCAACAACTG ATTGATAACA CTGGGACAGA TGAGCAGCAG
CTACGCCTTG AAAGCGAGCA AAACTTAGTG CAAATCGTCA CCATCCATAA GAGTAAGGGG
CTGGAATACC CAGTGTGCTT TGTGCCCTTT GTCAGCCTCG CGCGGGATAA TCGCCGCCGC
CCGACGCCTA TGCTCTACCA CAGAACCAAT GCCGATGGCG CGCAGGAACT GGTGTGGGAT
TTAGAGGGCA CGGATGAAGG TTGGGAACAG GCAAAGCAGG AAACCTTAGC CGAAGATCTG
CGTCTGCTCT ATGTGGCGCT CACCCGCCCC GTGTACCTGT GTTATTTGTA CATCGCCAAC
CATAGCCGCA TGTTAAAGGC GGGGCTTAAA AGCCAGCTGC ATGAAACCGC CATCGGTTAT
CTGCTTGGGA TCACTGACAC TGATTGTGAT TTTTCGCGTT TGCAAAATGC CGCCAAGGCG
CTGGTCGCAG GTCTTGAGTC GAGTCCGCCT GCGATCAGCA TTGAGGTGGT GGCCGACAAC
ATAGATGCTA ACAAGCTGCA TACGGGGGGA AGCGATTCTC AAACTTTGAG TGCCCGTAAG
GTCAGCCGTC AGTATCGCAC TCCATGGCGC GTCGGCAGTT ATTCCGGTTT AGTTAAAAAT
GCGCCCCACG CTAAAGCCAC ACCCGGCGCC GATGATGAAG TCAACGCCGT ATTGGGTACA
GATACAACAA ACAGCGCAGC TGATCCCTTA TGGGCAGCTC CCTTGTGGCA AGAGGCTTTG
TTGCAAGAAG TAGAACCGCA AGCGCAACCT CTGCTCAATC GCTTTAGTTT TGAGCGCGGC
GCCAACGCGG GTAGCTTTAT GCACTTAGTG CTTGAGTTAA TTGATTTTAC TCAAGCTCCA
ATCGACCTCC CCCGAGAGCT ACCCAAGGCC ATGTTGCAAT ACGGCATTGC CCCCGTGTGG
CAACCCATAT TAGAGGATTG GTACCTTGAG GTATTGCAAG CTCCGCTGGC GTTAATGGCG
CAGGATAATC AGCTTATTAA TCCCGAGCTG TGTTTAGCCG CACTCGCGCC GCAACACACC
TTAGTCGAGA TGGAGTTTTA CCTGCCACTG AATCGCTTAA AGGATACAGA GCTTAACCAA
CTCCTTGGGC AATTTGGCTA CGATACCGAG CTGCAGTTTG AGGAATTACA GGGCATGCTT
AAGGGGTTTA TCGACTTAAC CTTTGAATAT CAAGGAAAGT TTTATATAGC AGACTATAAG
TCGAACCATC TGGGGGATAA TATTCAGGCC TATCATCATA GTGCGCTAAA ACAGGCAATT
AGCGACCATA GGTATGATTT GCAATATATT CTCTACTCCC TCTCCCTGCA CCGCTATTTA
GCGATGCGCT TGCCCAATTA TGATTACGAT ACCCATATTG GCGGTTGTTA TTATTTGTTT
TTACGGGGAA TGTCGGTGCA ATATCCAGGC TTTGGTATTT ATTACGATAA ACCGCCCAAG
GCGCTGATTT TGGCCTTAGA TGGGCTGTTT CAGCGCAGCC TAGAGGCAAC AACTGACTCA
AATAAAAAGT CCGATGCTCA ACTGGATACG GGAGCAATGG CATGA
|
|---|
| Protein sequence | MTKVSPALPL DPLTLPFGGS RLIEASAGTG KTYTISGLYL RLLLGDGLSE SLNCEQILVV
TFTNAATEEL RDRIRRRIQV AFKCFLGLEI NDPFVQALYD KTPEAERAIA LRRFDLALKS
LDEAAIFTIH GFCQRILADL AFESSLLFES DFTLDDSEFL HHAVRDFWRE ACYPLPEYLA
QIIASEFGDP DGLVKQLRAL LGASEAKPLK PVQPFARLAE SLSQSVQRFK LAWPRGRDAL
LELLHSLPLN GQRFGKASDN YPKLAEMFDQ LDNFLAFGHG LPPLKVLEAL SLSELKLNKG
GVIPSASEAP LLDHMEQLAA LINAIKPAFL YSAKQGISER FAKQKQQKNV LTPDDLLTTL
AAAMQANPDT LPKAVASRFP VALIDEFQDT DPLQFAIFSG IYQTRLGVDT QDPAAAEPKP
RTDSKLSLLM IGDPKQAIYA FRGADIYTYI EARRQTEAHY FLDTNYRSSR NLVVGVNHLF
AQHSDPFISQ SIPFDPVKTP ASAAAKQLVE HAPNSAALRL KLLSEGDTGL NKASARQTLA
EDTAAEITRL LTQAANGQCS TPKGPLIAKD IAILVRDRNE AAVMKTALSK RQIGAVFLSR
DSVFETVEAR EMALILRALA SPKDERALRS ALATALLGYR AEQIHAFNQD EEQRQRLLEH
FFELHQIWQK RGIMPALLSL ANATQMVARL LHSPILPSTD QAEQDAAAQL EASNGERRLT
DFRHLAELLQ QKATEIDGIS ALLNWYEQQL IDNTGTDEQQ LRLESEQNLV QIVTIHKSKG
LEYPVCFVPF VSLARDNRRR PTPMLYHRTN ADGAQELVWD LEGTDEGWEQ AKQETLAEDL
RLLYVALTRP VYLCYLYIAN HSRMLKAGLK SQLHETAIGY LLGITDTDCD FSRLQNAAKA
LVAGLESSPP AISIEVVADN IDANKLHTGG SDSQTLSARK VSRQYRTPWR VGSYSGLVKN
APHAKATPGA DDEVNAVLGT DTTNSAADPL WAAPLWQEAL LQEVEPQAQP LLNRFSFERG
ANAGSFMHLV LELIDFTQAP IDLPRELPKA MLQYGIAPVW QPILEDWYLE VLQAPLALMA
QDNQLINPEL CLAALAPQHT LVEMEFYLPL NRLKDTELNQ LLGQFGYDTE LQFEELQGML
KGFIDLTFEY QGKFYIADYK SNHLGDNIQA YHHSALKQAI SDHRYDLQYI LYSLSLHRYL
AMRLPNYDYD THIGGCYYLF LRGMSVQYPG FGIYYDKPPK ALILALDGLF QRSLEATTDS
NKKSDAQLDT GAMA
|
|---|
| |