Gene Shewmr4_1750 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1750 
Symbol 
ID4252324 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp2075168 
End bp2076886 
Gene Length1719 bp 
Protein Length572 aa 
Translation table11 
GC content49% 
IMG OID638118361 
Productacetolactate synthase 3 catalytic subunit 
Protein accessionYP_733881 
Protein GI113970088 
COG category[E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism 
COG ID[COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 
TIGRFAM ID[TIGR00118] acetolactate synthase, large subunit, biosynthetic type 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.524546 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGAAGT TATCCGGCGC CAGCATGATT GTGCGATCCC TTATCGATGA AGGTGTAAAG 
CACATATTTG GTTATCCTGG CGGCTCAGTG TTAGATATCT ACGACGCCCT GCACCTTATC
CCCGGTATTG AACATATTCT GGTTCGTCAC GAACAAGCTG CCGTGCATAT GGCCGATGGT
TATGCCCGCG CCACGGGTAA AGTGGGCGTG GTACTCGTGA CCTCAGGCCC AGGTGCCACC
AATGCTATTA CCGGCATCGC CACCGCCTAT ATGGATTCAA TTCCATTAGT GGTGTTATCA
GGCCAAGTGC CGAGCAATTT AATCGGTAAC GATGCGTTCC AAGAATGCGA CATGATTGGG
ATTTCACGCC CAGTCGTCAA ACACAGCTTT TTAGTACAAG ATCCCACTCA AATTCCTGAG
ATCATTAAAA AAGCCTTTTA TATTGCTTCC ACAGGTCGCC CCGGCCCCGT GGTTGTCGAC
TTGCCAAAGG ATTGCCTCAA TCCAGCATTA CTGCACGACT ATATTTACCC CGAGAGCATT
AAAATGCGCT CCTATAATCC AACGACATCG GGCCATAAGG GTCAAATTCG CCGTGGATTA
CAGGCATTAC TCGCCGCGAA AAAACCTGTG CTTTATGTGG GTGGAGGCGC CATTATCTCA
AGCAGTGAAA AGCAGATCTT AGCCCTAGCG GAAAAATTAA ATATCCCCGT TGTCAGCACC
TTGATGGGCC TTGGCGCCTT CCCTGGCACC CATAAAAACA GCTTAGGAAT GCTGGGGATG
CACGGTCGTT ATGAAGCCAA CATGACCATG CATAACTGCG ATCTTATCTT CGGGATTGGC
GTGCGTTTTG ATGACAGAAC CACCAACAAC ATCGAAAAAT ACTGCCCTAA TGCCACCATT
TTACATATTG ATATCGACCC TTCATCGATT TCAAAAACCG TGCGAGTGGA TATCCCCATC
GTTGGCTCCG CCGATATCGT ACTAGACAGC ATGCTAGCTT TGCTGGAGGA ATCAAAGGAG
AGCAACGATA GCGAGGCAAT TAATCAATGG TGGCAAGAAA TCACGGTTTG GCGTAACCGC
AACTGCTTGG CATACGATAA GGAAAGCCAT CGGATCAAAC CACAGCAAGT GATTGAAACC
CTTTACAAAC TCACTAATGG TGAGGCCTAT GTCGCCTCGG ATGTAGGCCA GCATCAAATG
TTTGCCGCGC TGTATTATCC CTTTGATAAA CCTCGTCATT GGATTAACTC CGGCGGCCTT
GGCACCATGG GCTTTGGTCT ACCCGCTGCC ATGGGAGTCA AAATGGCAAT GCCGGACGAA
ACCGTTGTGT GCGTCACGGG CGATGGTTCG ATTCAGATGA ATATTCAAGA GCTTTCAACC
GCTCTGCAAT ACGATACGCC GGTTAAAATT ATCAACTTAA ACAACCGTTT CCTTGGCATG
GTGAAACAAT GGCAGGATAT GATCTACTCG GGTCGCCATT CCCATTCCTA TATGGATTCG
GTCCCCAACT TTGCCAAAAT TGCCGAAGCC TATGGCCATG TTGGTATGAC GATTAGCGAT
CCTGCTGAGC TTGAGTCTAA GATGGCCGAA GCCCTTGCCA TGAAAGACAG ACTGGTATTT
ATCGACATTA TGGTGGATGA GACTGAGCAC GTGTATCCCA TGCTTATCCG CGGCGGCGCG
ATGAATGAAA TGTGGTTAAG CAAAACGGAG AAATGCTAA
 
Protein sequence
MEKLSGASMI VRSLIDEGVK HIFGYPGGSV LDIYDALHLI PGIEHILVRH EQAAVHMADG 
YARATGKVGV VLVTSGPGAT NAITGIATAY MDSIPLVVLS GQVPSNLIGN DAFQECDMIG
ISRPVVKHSF LVQDPTQIPE IIKKAFYIAS TGRPGPVVVD LPKDCLNPAL LHDYIYPESI
KMRSYNPTTS GHKGQIRRGL QALLAAKKPV LYVGGGAIIS SSEKQILALA EKLNIPVVST
LMGLGAFPGT HKNSLGMLGM HGRYEANMTM HNCDLIFGIG VRFDDRTTNN IEKYCPNATI
LHIDIDPSSI SKTVRVDIPI VGSADIVLDS MLALLEESKE SNDSEAINQW WQEITVWRNR
NCLAYDKESH RIKPQQVIET LYKLTNGEAY VASDVGQHQM FAALYYPFDK PRHWINSGGL
GTMGFGLPAA MGVKMAMPDE TVVCVTGDGS IQMNIQELST ALQYDTPVKI INLNNRFLGM
VKQWQDMIYS GRHSHSYMDS VPNFAKIAEA YGHVGMTISD PAELESKMAE ALAMKDRLVF
IDIMVDETEH VYPMLIRGGA MNEMWLSKTE KC