| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1736 |
|---|
| Symbol | |
|---|
| ID | 4252310 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 2064178 |
|---|
| End bp | 2064903 |
|---|
| Gene Length | 726 bp |
|---|
| Protein Length | 241 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638118347 |
|---|
| Product | RNA methyltransferase |
|---|
| Protein accession | YP_733867 |
|---|
| Protein GI | 113970074 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0565] rRNA methylase |
|---|
| TIGRFAM ID | [TIGR00050] RNA methyltransferase, TrmH family, group 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000887935 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTAAGTA ATATTCGTGT GATTTTAGTG GGGACATCGC ACCCCGGCAA TATTGGCTCG
ACCGCCAGAG CGATGAAGAC CATGGGGTTA TCGACCCTGT ATCTTGCCGA ACCAAGATGT
GAAGTAGATG GTCAATCCAT CGCCTTGGCT GCCGGTGCAT CGGACATTTT AAAGCATTTG
GTGAAAGTGG ATTCCTTAGA AGAAGCCATC GCCGATTGCA GTTTAGTGAT TGCCACCAGT
GCTCGCAGTC GTACCTTAGA TTGGCCAATG CTCGATCCGC GTGAAGCGGG GCAAAAGCTG
GTCACTGAGG GATTATCAGG ACCTGTCGCC ATTGTCTTTG GCCGTGAAAA CCATGGTTTG
ACCAATGAAG AATTGCAGCA ATGTACATAT CATGTGGCTA TTCCTGCTAA CCCTGAATAC
AGCTCATTGA ATTTAGCGCA AGCAGTGCAG ATTATTTGTT ATGAGACGCG TGTAGCACAC
TTAGCGCAAA CAGCGGCGCC GCAAGTGGAG GAAGAATATC CGCTTTCTGC CGATCTCGAG
CGTTTCTTTG TGCACTTAGA AAGCACCTTA TCATCGACAG GTTTTATTAT TAAAAACCAC
CCCGGCCAAG TGATGACTAA GCTACGTCGT CTGTTTAGCC GTGCACGTAT CGAAAGCCAA
GAGATGAACA TTCTTCGAGG CATTCTAACC TCGATAGATA AAGTGGTGGG TAACAAACAA
AAATAG
|
|---|
| Protein sequence | MLSNIRVILV GTSHPGNIGS TARAMKTMGL STLYLAEPRC EVDGQSIALA AGASDILKHL
VKVDSLEEAI ADCSLVIATS ARSRTLDWPM LDPREAGQKL VTEGLSGPVA IVFGRENHGL
TNEELQQCTY HVAIPANPEY SSLNLAQAVQ IICYETRVAH LAQTAAPQVE EEYPLSADLE
RFFVHLESTL SSTGFIIKNH PGQVMTKLRR LFSRARIESQ EMNILRGILT SIDKVVGNKQ
K
|
|---|
| |