| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1734 |
|---|
| Symbol | |
|---|
| ID | 4252308 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 2061841 |
|---|
| End bp | 2063091 |
|---|
| Gene Length | 1251 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638118345 |
|---|
| Product | LolC/E family lipoprotein releasing system, transmembrane protein |
|---|
| Protein accession | YP_733865 |
|---|
| Protein GI | 113970072 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00172788 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.754695 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGGAC CATTAGCCCT CTCCATTGGT TGGCGTTTTT ATCGTGCGCG CCAATCCAAT
AGTTTTATTA GTTTTATCTC CTTTGCATCA ACCGCGGGCA TTGCGCTAGG GGTTGCAGTA
CTGATTGTGG TGCTCTCAGC AATGAATGGC TTTGAGCGTG AGTTAGAGCA GCGCTTGTTA
GGTGTGATCT CCCAAGCCGA TGTGGTTGGC GTGAATGAGC CGATTGCCGA CTGGCGCGCA
GTTGAGCAAA CCGCCATGCA GATTGAAGGC ATTACGGCGG CGGCACCTTT TATTCGGATG
CAAGGATTAG TACAAAAGCC CGGTGGTTTT CAGGGGCTTG CTGTTGTGGG AATCGACCCT
GAGCAAGAGG CAAAAGTCTC GACTCTCTCG CAATTTATGT CGAAAGAGAC TTGGCAAGGC
TTAGGCGAGG ATGACAATCA CATCGTCCTC GGTGAGAGCT TGCTGAAAAA GTTAGGCCTC
GAAGTTGGCG ATACCCTCGC TCTGTATGTG CAAGATCTTG ATCCTGAACA TGCCGGCAGT
TTACGGGCGG CCAAGAGCCA TCGCTTTGTG GTGTCGGGTG TGTACCGTTT AGGTGGCGAG
CTTGAGTTAA CCACGGCGTA TATTCCGATG CGCTATGCGG CGAATATCCT GAATTTACAT
CAAGGTGTCA CTGGGGTGCG GATCAGTGTG GCGCAGGTGT TTGATGCGCC AGCGAAAATT
CGTGAGTTGG GTTATGCCTT AAACCAGTCC GTTTATATCA GTGATTGGAC GCGTACCCAA
GGGCATTTAT ATCAAGATAT TCAATTGGTT CGCACCATTA TGTATCTCGT TTTGGTGTTA
GTGATTGGCG TGGCCTGTTT CAATATTGTC TCAACGCTAG TCATGGCGGT GCGGGATAAA
GCCAGTGAAA TCGCCATTCT GATGACCATG GGGTTAAGCC GTCTCTCAGT GATGGGGATT
TTTATGGTGC AAGGCGCGTT AAATGGCCTT GTAGGTTGTG CCCTCGGCGG TGTGATAGGT
ATTGCGACCG CGGTGAATCT CAGTGGTATT GCCCGTGGTA TTGAGCAGCT GCTCGGAATT
CAACTCCTGT CGGCCGATGT GTATTTTGTG GATTTTCTGC CGTCAGAGCT ACATATGACA
GATGCTGGTT TAGTGATTGC CACGGCGTTT GTGATGAGTC TTATCGCAAC CCTGTATCCC
GCGTGGAAGG CGAGCCAGAT TGGCCCTGCG CAGGCGTTGG CGGGTAGGTA G
|
|---|
| Protein sequence | MKGPLALSIG WRFYRARQSN SFISFISFAS TAGIALGVAV LIVVLSAMNG FERELEQRLL
GVISQADVVG VNEPIADWRA VEQTAMQIEG ITAAAPFIRM QGLVQKPGGF QGLAVVGIDP
EQEAKVSTLS QFMSKETWQG LGEDDNHIVL GESLLKKLGL EVGDTLALYV QDLDPEHAGS
LRAAKSHRFV VSGVYRLGGE LELTTAYIPM RYAANILNLH QGVTGVRISV AQVFDAPAKI
RELGYALNQS VYISDWTRTQ GHLYQDIQLV RTIMYLVLVL VIGVACFNIV STLVMAVRDK
ASEIAILMTM GLSRLSVMGI FMVQGALNGL VGCALGGVIG IATAVNLSGI ARGIEQLLGI
QLLSADVYFV DFLPSELHMT DAGLVIATAF VMSLIATLYP AWKASQIGPA QALAGR
|
|---|
| |