Gene Shewmr4_1730 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1730 
Symbol 
ID4252304 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp2055538 
End bp2059020 
Gene Length3483 bp 
Protein Length1160 aa 
Translation table11 
GC content52% 
IMG OID638118341 
Producttranscription-repair coupling factor 
Protein accessionYP_733861 
Protein GI113970068 
COG category[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG1197] Transcription-repair coupling factor (superfamily II helicase) 
TIGRFAM ID[TIGR00580] transcription-repair coupling factor (mfd) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00119053 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.38574 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACAAA TTTCAGCCCT AACACCGCCC GTTGTCAAAA ATGGAACTCA AATGCAAACC 
CTGTCGTGTC TCGCTGGGGT TGGTCAAGCC GTTACCCTCG CCAGCCTAGT TCGCCAACAC
AAGGGCACGA CACTGATTGT GACCAGTGAT ACGCCGACGG CATTGAGTAT CGAGTTAGAG
CTCAACTATT TGTTGGCTAA AAGTGCGATT AAGGTGCGAC TGTTCCCTGA CCGTGAAACC
CTGCCCTACG ACAGTTTTTC GCCCCATCAG GATTTGATTT CCCAGCGTTT AGAAACCCTG
TCGCAAATCA CCCAAGCCGA GCACAGCGTA GTGATAGTGC CAGTGACGAC GCTGATGATG
CGCCTGCCAC CGAAATCCTA TTTAAGCTCC AATGTGTTTG TGCTTAAAAA AGGCGATAAA
TATCAGCTCC ATGATGTGCG CCAACAGTTA ACCGACACGG GTTATCACTT GGTCGAACAG
GTTTACGAAC ATGGCGAGTT TGCTATTCGT GGCTCGATTC TCGATATCTT CCCTACTGGC
GTGAATATGC CGCTGCGTAT CGAACTGTTC GATGATGAAG TCGAGACCAT TCGTCATTTC
GATCCTGAAA CCCAGCGCTC ATCCACTCCA GTCGATGCGG TGCGCCTATT ACCTGCCAAG
GAATTCCCTA CCGACAGCAG CGCCATCGAA GGTTTTAGGC AGCGTTATCG CCGCCGTTTT
GAGGTCATAG TCAAGGAGCC TGAATCAGTT TATCAACTGG TGAGCCGCAA TTTGATGCCC
GCGGGCATTG AGAACTATCT GCCACTGTTT TTCGATGAAG TCGCGACACT GTTCGATTAT
CTGCCGAAGG ACACTCAGTT AGTCACCCTA GGCGATATCG AAAAGTCCGC CCGCGCTCAT
TTGCAAGAGG TAGAAACCCG CTATGAAGAC AGACGGGTCG ACCCATTGCG GCCGCTGTTG
GCACCAAAAG AGCTGTATTT ACTGATAGAA GAATTATTTG CCGCCTTTAA GCCGCTGCCT
CGCTATCAGT TTATTGCGCC GCAACCCGAT GTCGTCGCTG GCGCAGTACA GATTGATGCA
AGTGTGTTGC CCGAGGTAAG CGCTAATCAC AAGTTAAAGC AGCCACTGAT TGCGCTGCAA
GATTACGCCG AACATGCGCC GCGGATGTTG TTTAGTGCCG AATCGGAAGG CCGCCGCGAA
GCCTTGCTCG AACTCTTAGG TAAAATCCAG TTAAAACCGG CGTTATTCGG CCATTTTGAT
GAATTTATTC AAAGTGATGC CAAACTTGGC CTAATTGTAT CTCCCCTCTC CCGTGGTTGT
TTACTCGGGC TAGGAAAGCA AACCGCCGTC AGCATCATCT GCGAAACCGA ACTCTTTGGT
CATCGCATCT CCCAGCAGCG CCGCCGTGAA AAACAACGCC AGATCAGCAA CGATACTCTG
ATCAAAAACT TAGCCGAGCT CAAAGTCGGC CAGCCGATTG TGCACTTAGA GCACGGTGTG
GCGCTGTATC AAGGCTTAGT CACCTTAGAT ACCGGCGGAT TAGTGGCCGA ATACCTACAG
CTGGAATACT CGGGCGGCGA TAAACTCTAT GTGCCCGTGT CCAACCTGCA CATGATCAGC
CGCTACAGCG TCGGCGCCGA TGGCGATGCG CACCTCAATA AACTCGGTAA CGACACTTGG
GCCAAGGCAA AAAACAAAGC GATTGAGAAA ATCCGCGATG TGGCTGCCGA GCTGCTCGAT
GTCTACGCTC GCCGTCAAGC ACGCCCCGGT GAGAGCTGCG ACATCAACGA TGAAGAGTAT
GCGCAATTCG CCCAGGGTTT CCCCTTTGAA GAAACCGTCG ATCAGGAAAG CGCGATTCAT
GCCGTACTTG CCGATATGCA ATCCCCCGTC GCCATGGACC GCCTCGTCTG CGGTGACGTG
GGCTTTGGTA AGACTGAAGT CGCGATGCGC GCCGCCTTTG TGGCGGTGAA TGCGGGTAAA
CAGGTGGTGG TGCTAGTGCC CACCACGCTA CTCGCCCAGC AGCACTACGA AAACTTTAAA
GACAGATTTG CCGACTGGCC CGTCGTAATT GAGGTGATGT CACGCTTTAG AACCGCCAAA
GAGCAAACTC AAGTGCTGAA GCAGCTCGAA GAAGGCAAAG TCGATATCGT CATTGGCACC
CATAAGCTGC TGCAATCCGA GGCAAAGTTT GAAAACTTAG GCCTGCTTAT CATCGATGAA
GAACACAGAT TCGGCGTAAG ACAAAAAGAG AAAATCAAGG CGCTGCGCGC CAACGTGGAT
ATTTTGACCC TCACCGCCAC TCCGATCCCC CGCACCTTAA ACATGGCGAT GTCGGGGATG
CGCGACTTAT CGATTATTGC GACTCCTCCC GCTAAACGCT TGGCGGTGAA GACCTTTGTG
CGCGAATCCG ATCCCGCCAC CGTGCGTGAG GCCATACTGC GTGAAATTCT CCGTGGTGGC
CAAGTGTATT ATTTGCACAA CAATGTCGAA ACCATTGAGA AATGCGCCCA AGATATTAGT
ACCCTGCTAC CCGAAGCGCG GGTGGTGGTG GCCCATGGTC AAATGCGTGA ACGGGATCTT
GAGCGGGTGA TGTCGGACTT TTATCATCAA AGATTCAACG TGTTAGTCTG TACCACTATT
ATCGAAACCG GTATCGACGT CCCCAGTGCG AATACGATTA TTATCGAACG CGCCGACACC
TTCGGCTTAG CCCAGTTGCA TCAGCTGCGT GGCCGCGTCG GTCGCTCTCA CCATCAAGCC
TATGCGTATT TGATGACACC GCATCCTAAA CGCATGACCA GCGATGCCCG CAAACGCCTC
GAAGCCATCG ATGCCCTCGA GGATTTAGGC GCAGGCTTTA TGCTCGCTAC CCAAGACTTA
GAGATCCGCG GCGCGGGTGA GCTATTGGGC GATGAGCAAA GCGGCCATAT TTCTAAAATC
GGCTTTAGTC TCTATATGGA AATGTTGGAA TCGGCGGTCA AGGCACTCAA ACTGGGGAAA
GAGCCATCGC TGGCGCAAAT GCTCAATCAG CAATGTGAGA TGGAGCTAAG GATCCCTGCG
CTATTGCCGG AAGACTATGT CGGTGATGTG AATATTCGCC TGTCACTCTA TAAGCGCATC
GCCAGTTGTG ACAGTGAAGA AGCCTTAGAT GAACTCAAGG TTGAGCTTAT CGACCGCTTC
GGTCTGCTGC CCGAGGCCAC CAAAAACCTG ATGGAAATGA CTTTATATAA ACATCAGGCA
ACTCGGCTGG GCGCGACTAA AATTGAGGTA CATGCCAAGG GCGGCAGCAT CGAATTTAGT
GATGATCATG TGATTGATCC CGGCTTTATC ATCGGATTAC TGCAAAGTCA GCCACAAATC
TATCGAATGG ATGGGCCGAA TAAGTTAAAG TTCATCCTCA ATGCCGAAAC GGCAAAAGAT
AGGCTCGCTT TGGTCAAACT CTTGCTCGAA CAACTATCGC AACATCGTCT TGGAGATAAA
TAG
 
Protein sequence
MTQISALTPP VVKNGTQMQT LSCLAGVGQA VTLASLVRQH KGTTLIVTSD TPTALSIELE 
LNYLLAKSAI KVRLFPDRET LPYDSFSPHQ DLISQRLETL SQITQAEHSV VIVPVTTLMM
RLPPKSYLSS NVFVLKKGDK YQLHDVRQQL TDTGYHLVEQ VYEHGEFAIR GSILDIFPTG
VNMPLRIELF DDEVETIRHF DPETQRSSTP VDAVRLLPAK EFPTDSSAIE GFRQRYRRRF
EVIVKEPESV YQLVSRNLMP AGIENYLPLF FDEVATLFDY LPKDTQLVTL GDIEKSARAH
LQEVETRYED RRVDPLRPLL APKELYLLIE ELFAAFKPLP RYQFIAPQPD VVAGAVQIDA
SVLPEVSANH KLKQPLIALQ DYAEHAPRML FSAESEGRRE ALLELLGKIQ LKPALFGHFD
EFIQSDAKLG LIVSPLSRGC LLGLGKQTAV SIICETELFG HRISQQRRRE KQRQISNDTL
IKNLAELKVG QPIVHLEHGV ALYQGLVTLD TGGLVAEYLQ LEYSGGDKLY VPVSNLHMIS
RYSVGADGDA HLNKLGNDTW AKAKNKAIEK IRDVAAELLD VYARRQARPG ESCDINDEEY
AQFAQGFPFE ETVDQESAIH AVLADMQSPV AMDRLVCGDV GFGKTEVAMR AAFVAVNAGK
QVVVLVPTTL LAQQHYENFK DRFADWPVVI EVMSRFRTAK EQTQVLKQLE EGKVDIVIGT
HKLLQSEAKF ENLGLLIIDE EHRFGVRQKE KIKALRANVD ILTLTATPIP RTLNMAMSGM
RDLSIIATPP AKRLAVKTFV RESDPATVRE AILREILRGG QVYYLHNNVE TIEKCAQDIS
TLLPEARVVV AHGQMRERDL ERVMSDFYHQ RFNVLVCTTI IETGIDVPSA NTIIIERADT
FGLAQLHQLR GRVGRSHHQA YAYLMTPHPK RMTSDARKRL EAIDALEDLG AGFMLATQDL
EIRGAGELLG DEQSGHISKI GFSLYMEMLE SAVKALKLGK EPSLAQMLNQ QCEMELRIPA
LLPEDYVGDV NIRLSLYKRI ASCDSEEALD ELKVELIDRF GLLPEATKNL MEMTLYKHQA
TRLGATKIEV HAKGGSIEFS DDHVIDPGFI IGLLQSQPQI YRMDGPNKLK FILNAETAKD
RLALVKLLLE QLSQHRLGDK