Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1730 |
Symbol | |
ID | 4252304 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 2055538 |
End bp | 2059020 |
Gene Length | 3483 bp |
Protein Length | 1160 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638118341 |
Product | transcription-repair coupling factor |
Protein accession | YP_733861 |
Protein GI | 113970068 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00119053 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.38574 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACACAAA TTTCAGCCCT AACACCGCCC GTTGTCAAAA ATGGAACTCA AATGCAAACC CTGTCGTGTC TCGCTGGGGT TGGTCAAGCC GTTACCCTCG CCAGCCTAGT TCGCCAACAC AAGGGCACGA CACTGATTGT GACCAGTGAT ACGCCGACGG CATTGAGTAT CGAGTTAGAG CTCAACTATT TGTTGGCTAA AAGTGCGATT AAGGTGCGAC TGTTCCCTGA CCGTGAAACC CTGCCCTACG ACAGTTTTTC GCCCCATCAG GATTTGATTT CCCAGCGTTT AGAAACCCTG TCGCAAATCA CCCAAGCCGA GCACAGCGTA GTGATAGTGC CAGTGACGAC GCTGATGATG CGCCTGCCAC CGAAATCCTA TTTAAGCTCC AATGTGTTTG TGCTTAAAAA AGGCGATAAA TATCAGCTCC ATGATGTGCG CCAACAGTTA ACCGACACGG GTTATCACTT GGTCGAACAG GTTTACGAAC ATGGCGAGTT TGCTATTCGT GGCTCGATTC TCGATATCTT CCCTACTGGC GTGAATATGC CGCTGCGTAT CGAACTGTTC GATGATGAAG TCGAGACCAT TCGTCATTTC GATCCTGAAA CCCAGCGCTC ATCCACTCCA GTCGATGCGG TGCGCCTATT ACCTGCCAAG GAATTCCCTA CCGACAGCAG CGCCATCGAA GGTTTTAGGC AGCGTTATCG CCGCCGTTTT GAGGTCATAG TCAAGGAGCC TGAATCAGTT TATCAACTGG TGAGCCGCAA TTTGATGCCC GCGGGCATTG AGAACTATCT GCCACTGTTT TTCGATGAAG TCGCGACACT GTTCGATTAT CTGCCGAAGG ACACTCAGTT AGTCACCCTA GGCGATATCG AAAAGTCCGC CCGCGCTCAT TTGCAAGAGG TAGAAACCCG CTATGAAGAC AGACGGGTCG ACCCATTGCG GCCGCTGTTG GCACCAAAAG AGCTGTATTT ACTGATAGAA GAATTATTTG CCGCCTTTAA GCCGCTGCCT CGCTATCAGT TTATTGCGCC GCAACCCGAT GTCGTCGCTG GCGCAGTACA GATTGATGCA AGTGTGTTGC CCGAGGTAAG CGCTAATCAC AAGTTAAAGC AGCCACTGAT TGCGCTGCAA GATTACGCCG AACATGCGCC GCGGATGTTG TTTAGTGCCG AATCGGAAGG CCGCCGCGAA GCCTTGCTCG AACTCTTAGG TAAAATCCAG TTAAAACCGG CGTTATTCGG CCATTTTGAT GAATTTATTC AAAGTGATGC CAAACTTGGC CTAATTGTAT CTCCCCTCTC CCGTGGTTGT TTACTCGGGC TAGGAAAGCA AACCGCCGTC AGCATCATCT GCGAAACCGA ACTCTTTGGT CATCGCATCT CCCAGCAGCG CCGCCGTGAA AAACAACGCC AGATCAGCAA CGATACTCTG ATCAAAAACT TAGCCGAGCT CAAAGTCGGC CAGCCGATTG TGCACTTAGA GCACGGTGTG GCGCTGTATC AAGGCTTAGT CACCTTAGAT ACCGGCGGAT TAGTGGCCGA ATACCTACAG CTGGAATACT CGGGCGGCGA TAAACTCTAT GTGCCCGTGT CCAACCTGCA CATGATCAGC CGCTACAGCG TCGGCGCCGA TGGCGATGCG CACCTCAATA AACTCGGTAA CGACACTTGG GCCAAGGCAA AAAACAAAGC GATTGAGAAA ATCCGCGATG TGGCTGCCGA GCTGCTCGAT GTCTACGCTC GCCGTCAAGC ACGCCCCGGT GAGAGCTGCG ACATCAACGA TGAAGAGTAT GCGCAATTCG CCCAGGGTTT CCCCTTTGAA GAAACCGTCG ATCAGGAAAG CGCGATTCAT GCCGTACTTG CCGATATGCA ATCCCCCGTC GCCATGGACC GCCTCGTCTG CGGTGACGTG GGCTTTGGTA AGACTGAAGT CGCGATGCGC GCCGCCTTTG TGGCGGTGAA TGCGGGTAAA CAGGTGGTGG TGCTAGTGCC CACCACGCTA CTCGCCCAGC AGCACTACGA AAACTTTAAA GACAGATTTG CCGACTGGCC CGTCGTAATT GAGGTGATGT CACGCTTTAG AACCGCCAAA GAGCAAACTC AAGTGCTGAA GCAGCTCGAA GAAGGCAAAG TCGATATCGT CATTGGCACC CATAAGCTGC TGCAATCCGA GGCAAAGTTT GAAAACTTAG GCCTGCTTAT CATCGATGAA GAACACAGAT TCGGCGTAAG ACAAAAAGAG AAAATCAAGG CGCTGCGCGC CAACGTGGAT ATTTTGACCC TCACCGCCAC TCCGATCCCC CGCACCTTAA ACATGGCGAT GTCGGGGATG CGCGACTTAT CGATTATTGC GACTCCTCCC GCTAAACGCT TGGCGGTGAA GACCTTTGTG CGCGAATCCG ATCCCGCCAC CGTGCGTGAG GCCATACTGC GTGAAATTCT CCGTGGTGGC CAAGTGTATT ATTTGCACAA CAATGTCGAA ACCATTGAGA AATGCGCCCA AGATATTAGT ACCCTGCTAC CCGAAGCGCG GGTGGTGGTG GCCCATGGTC AAATGCGTGA ACGGGATCTT GAGCGGGTGA TGTCGGACTT TTATCATCAA AGATTCAACG TGTTAGTCTG TACCACTATT ATCGAAACCG GTATCGACGT CCCCAGTGCG AATACGATTA TTATCGAACG CGCCGACACC TTCGGCTTAG CCCAGTTGCA TCAGCTGCGT GGCCGCGTCG GTCGCTCTCA CCATCAAGCC TATGCGTATT TGATGACACC GCATCCTAAA CGCATGACCA GCGATGCCCG CAAACGCCTC GAAGCCATCG ATGCCCTCGA GGATTTAGGC GCAGGCTTTA TGCTCGCTAC CCAAGACTTA GAGATCCGCG GCGCGGGTGA GCTATTGGGC GATGAGCAAA GCGGCCATAT TTCTAAAATC GGCTTTAGTC TCTATATGGA AATGTTGGAA TCGGCGGTCA AGGCACTCAA ACTGGGGAAA GAGCCATCGC TGGCGCAAAT GCTCAATCAG CAATGTGAGA TGGAGCTAAG GATCCCTGCG CTATTGCCGG AAGACTATGT CGGTGATGTG AATATTCGCC TGTCACTCTA TAAGCGCATC GCCAGTTGTG ACAGTGAAGA AGCCTTAGAT GAACTCAAGG TTGAGCTTAT CGACCGCTTC GGTCTGCTGC CCGAGGCCAC CAAAAACCTG ATGGAAATGA CTTTATATAA ACATCAGGCA ACTCGGCTGG GCGCGACTAA AATTGAGGTA CATGCCAAGG GCGGCAGCAT CGAATTTAGT GATGATCATG TGATTGATCC CGGCTTTATC ATCGGATTAC TGCAAAGTCA GCCACAAATC TATCGAATGG ATGGGCCGAA TAAGTTAAAG TTCATCCTCA ATGCCGAAAC GGCAAAAGAT AGGCTCGCTT TGGTCAAACT CTTGCTCGAA CAACTATCGC AACATCGTCT TGGAGATAAA TAG
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Protein sequence | MTQISALTPP VVKNGTQMQT LSCLAGVGQA VTLASLVRQH KGTTLIVTSD TPTALSIELE LNYLLAKSAI KVRLFPDRET LPYDSFSPHQ DLISQRLETL SQITQAEHSV VIVPVTTLMM RLPPKSYLSS NVFVLKKGDK YQLHDVRQQL TDTGYHLVEQ VYEHGEFAIR GSILDIFPTG VNMPLRIELF DDEVETIRHF DPETQRSSTP VDAVRLLPAK EFPTDSSAIE GFRQRYRRRF EVIVKEPESV YQLVSRNLMP AGIENYLPLF FDEVATLFDY LPKDTQLVTL GDIEKSARAH LQEVETRYED RRVDPLRPLL APKELYLLIE ELFAAFKPLP RYQFIAPQPD VVAGAVQIDA SVLPEVSANH KLKQPLIALQ DYAEHAPRML FSAESEGRRE ALLELLGKIQ LKPALFGHFD EFIQSDAKLG LIVSPLSRGC LLGLGKQTAV SIICETELFG HRISQQRRRE KQRQISNDTL IKNLAELKVG QPIVHLEHGV ALYQGLVTLD TGGLVAEYLQ LEYSGGDKLY VPVSNLHMIS RYSVGADGDA HLNKLGNDTW AKAKNKAIEK IRDVAAELLD VYARRQARPG ESCDINDEEY AQFAQGFPFE ETVDQESAIH AVLADMQSPV AMDRLVCGDV GFGKTEVAMR AAFVAVNAGK QVVVLVPTTL LAQQHYENFK DRFADWPVVI EVMSRFRTAK EQTQVLKQLE EGKVDIVIGT HKLLQSEAKF ENLGLLIIDE EHRFGVRQKE KIKALRANVD ILTLTATPIP RTLNMAMSGM RDLSIIATPP AKRLAVKTFV RESDPATVRE AILREILRGG QVYYLHNNVE TIEKCAQDIS TLLPEARVVV AHGQMRERDL ERVMSDFYHQ RFNVLVCTTI IETGIDVPSA NTIIIERADT FGLAQLHQLR GRVGRSHHQA YAYLMTPHPK RMTSDARKRL EAIDALEDLG AGFMLATQDL EIRGAGELLG DEQSGHISKI GFSLYMEMLE SAVKALKLGK EPSLAQMLNQ QCEMELRIPA LLPEDYVGDV NIRLSLYKRI ASCDSEEALD ELKVELIDRF GLLPEATKNL MEMTLYKHQA TRLGATKIEV HAKGGSIEFS DDHVIDPGFI IGLLQSQPQI YRMDGPNKLK FILNAETAKD RLALVKLLLE QLSQHRLGDK
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