| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1725 |
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| Symbol | |
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| ID | 4252299 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 2050112 |
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| End bp | 2051488 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638118336 |
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| Product | L-serine ammonia-lyase |
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| Protein accession | YP_733856 |
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| Protein GI | 113970063 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1760] L-serine deaminase |
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| TIGRFAM ID | [TIGR00720] L-serine dehydratase, iron-sulfur-dependent, single chain form |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0395889 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTAGCG TATTCGATAT GTTCAAGATC GGCATTGGCC CTTCGAGTTC ACACACTGTT
GGCCCCATGA AAGCGGGCAA AATTTTTATG CAGCACCTTG CTGACTCGGG CAAAATTGCC
CAAGTAGATG AATTACGAGC CGAATTGTTT GGTTCCCTCG GCCAAACGGG TAAAGGTCAC
GGCACGGGTA AAGCGGTAAT TTTAGGCTTA ATGGGTGAAG ATCCAGAAAC CGTCGACACC
GACAGCATCG ATGGCATTCT AGAACAAGTG TCTAAAAATG AGACCCTCAC CCTCAGCTGC
GGCAAAGTAG TCAAGTTTAC CCGTGAAGAC GGCATTACCT ACCACAGACG CAAAACGCTA
CCCGCCCATG CCAACGCCAT GACACTGTAT GCCTACAGCA ACGGCGAATG TATTTTTGAG
CGCACTTACT ACTCTGTAGG CGGCGGATTT ATCTTAGACG AAGATGAAAT CCATCAGCGC
AATGCCTCAC CAGCATCACA AATTGAATCA GCACCTTACG ATTTTAATAG CAGTGCCCAA
TTACTGGATT TATGTACTGA ACATGGCCTG AGCATTTCTT CCCTAATGAT GGCCAACGAG
CTTAGCCTCG CCAGCGAAGA AGAAGTCAAA GCTAAACTGT GGAATATCTG GCAAACCATG
AAAACCTGTA TCGAACGGGG TTATCAGAAG GAAGGTATTC TGCCTGGCGG CTTAAAACTG
CGTCGCCGCG CACCAGCACT CTATCGTCGT CTCAAAGCCG AAGGCCGTAA CAACGTCGAT
CCGTTAACCG CAATGGATTG GGTCGATTTA TTCGCCCTCT CGGTAAACGA GCAAAACGCT
GCTGGCGATC GCGTTGTCAC CGCACCAACA AACGGCGCCG CGGGCATTAT CCCTGCCGTG
CTGTGCTACT ACGATACCTT CGTGCAAGAA GTCGATATCG ATGTTTGCGC CCGTTACCTG
TTAACCGCTG CTGCGATTGG TATTTTATAC AAGAAAAATG CCTCGATTTC GGGCGCTGAA
GTCGGCTGTC AGGGCGAAGT TGGTGTAGCC TGTTCAATGG CCGCTGGCGC ATTGACCGAG
ATCATGGGCG GCACAGTCGA ACATGTTGAA AACGCGGCTG AAATTGGCAT GGAGCATAAC
CTAGGCCTGA CCTGCGACCC CGTAGGCGGC CTAGTACAAG TTCCTTGTAT TGAACGTAAT
GCGATGGGTG CAATCAAAGC GATTAACGCA TCACGCATGG CGCTGCGCGG CGACGGCAAC
CACAAGGTAT CACTGGATAA AGTGATAAAA ACCATGATGG ATACAGGTAA AGATATGCGC
AGTAAATACA AAGAAACCGC CAAAGGCGGC CTCGCTGTGA ACATTGTAGA GTGTTAA
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| Protein sequence | MISVFDMFKI GIGPSSSHTV GPMKAGKIFM QHLADSGKIA QVDELRAELF GSLGQTGKGH
GTGKAVILGL MGEDPETVDT DSIDGILEQV SKNETLTLSC GKVVKFTRED GITYHRRKTL
PAHANAMTLY AYSNGECIFE RTYYSVGGGF ILDEDEIHQR NASPASQIES APYDFNSSAQ
LLDLCTEHGL SISSLMMANE LSLASEEEVK AKLWNIWQTM KTCIERGYQK EGILPGGLKL
RRRAPALYRR LKAEGRNNVD PLTAMDWVDL FALSVNEQNA AGDRVVTAPT NGAAGIIPAV
LCYYDTFVQE VDIDVCARYL LTAAAIGILY KKNASISGAE VGCQGEVGVA CSMAAGALTE
IMGGTVEHVE NAAEIGMEHN LGLTCDPVGG LVQVPCIERN AMGAIKAINA SRMALRGDGN
HKVSLDKVIK TMMDTGKDMR SKYKETAKGG LAVNIVEC
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