Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1723 |
Symbol | |
ID | 4252298 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 2048052 |
End bp | 2048975 |
Gene Length | 924 bp |
Protein Length | 307 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638118335 |
Product | IS4 family transposase |
Protein accession | YP_733855 |
Protein GI | 113970062 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.060513 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGTCAAAGC CTCGTTATAA AACAACCAAC TGGAAGCAAT ACAACCAAGC CTTAATCAAC CGCGGTTCAC TTACCTTCTG GATTGATGAG GATGCAATTG CTAAGTGGAA AGCCAAGGTC GAGCCGCCCA AGAAAGGTCG CCCTCAATTA TTTAGCGACT TAGCCATTAC CACTGCGTTG ATGGTTAAGC GTATTTTCTC TATGCCACTG AGAGCCTTAC AGGGCTTTAT CAATTCGGTG TTTAAACTGG GTGACATCCC ATTATCTTGC CCGCATTACA CCTGTATCAG TAAACGCGCG AAAACGGTCA ATATTGCTTT TAAAACCAAG ACTCGCGGCG CCATTGAGCA CTTAGCTATC GACTCGACAG GCTTGAAGGT CTATGGCGAA GGTGAGTGGA AAGTGAAGAA ACACGGCACA GATGGAAAGC GCAGAGTGTG GCGTAAACTG CATATTGCCG TAGATACACA TAGCTATGAA ATTATTGCCG CAGAAATCAG TTTATCAGGT GTAACAGACG CTGAAGTGAT GCCCAATTTA CTTAAGCAAA CCCATCGAAA AATCCGTAAT ATCTCGGGTG ATGGTGCTTA CGACACGAAA GCTTGTCACG AAGCCGTTCG TCGAAAACGC GCTTTAGTGC TTATTCCTCC TAGGGAAGGT GCTGCGCTAT GGGAACAAGG GCATCCACGA AACTTAGCCG TCAGTTGGCA ACAGCTTCAT GGCTCAAATA AGCAATGGAA AAAACGGTAT GGTTATCATC GCCGCTCAAT CTCAGAAACC GCAATGTACA GGATAAAACA ACTGCTAGGA GGCACGTTGA GCATGCGGAA TTATAACGCT CAGGTGGGAG AAGCTTACGC GATGATTAGG GCTTTGAACA AACTCACTGG GCTAGGTATG CCTGAAACCC ACTATATAGC TTGA
|
Protein sequence | MSKPRYKTTN WKQYNQALIN RGSLTFWIDE DAIAKWKAKV EPPKKGRPQL FSDLAITTAL MVKRIFSMPL RALQGFINSV FKLGDIPLSC PHYTCISKRA KTVNIAFKTK TRGAIEHLAI DSTGLKVYGE GEWKVKKHGT DGKRRVWRKL HIAVDTHSYE IIAAEISLSG VTDAEVMPNL LKQTHRKIRN ISGDGAYDTK ACHEAVRRKR ALVLIPPREG AALWEQGHPR NLAVSWQQLH GSNKQWKKRY GYHRRSISET AMYRIKQLLG GTLSMRNYNA QVGEAYAMIR ALNKLTGLGM PETHYIA
|
| |