| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1712 |
|---|
| Symbol | |
|---|
| ID | 4252287 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 2030145 |
|---|
| End bp | 2030861 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638118324 |
|---|
| Product | zeta toxin family protein |
|---|
| Protein accession | YP_733844 |
|---|
| Protein GI | 113970051 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.00964681 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGACGATC AACAGATCAC TGAGAAAGCT ACCAAAGAAG CCAAGAAAAT GAAAAAAGCG
GTGGCCAATA GGTTAGTTGA TCATTTACCG CAGGAGGAGT CTCCGGTATC TGTTTTTATG
GCAGGCTCAC CTGGTGCGGG TAAAACTGAA ACAGCCCGTG CGATGATCCG CGCATTTGCT
AATGAGCATG GTCAAGGCTT GGTGCATATT GAAAACGATG AGCTTAGAAA AGAGTTTGAA
GATTATAACG GCTTGAATTC GCCTCTGTTT CAACGTCCCG CTACACTGTT AGTTGAGGCT
ATTCATGACC GCGCATTAAA GCGCAATGTA AGCTTCATTT TGGACTCAAC ACTCTCTAGC
TTTGACAAGG CAAAAGACAA CATTGTACGC TCCATAGGAC ATGAGCGTTA CGTGCTTATT
ATCTTTGTTT ATCAGGAACC TGAACAAGCA TGGAAACTGG TGAAAGCGCG GGAGAAAGTT
GAAGGCAGGC GAGTACCTGA AGCAGTGTTT GTTGAGCAGT TTCTGGAATC GCAACGCGTG
GTAAGTGAAC TTAAACGCCA TTTTAAAGAC AAAATTAATA TTACGTTCAT CGAAAAAAAC
ATTGACGGTG ACAACGATAA CCCCCACTTT AATGTGACTG ACATTGACGC GTTATTGCGC
AAAAAGTACA ATCGCCAGTC CTTAGAAGCC ATCGTTGGCC TAAATCCAGT TACATAA
|
|---|
| Protein sequence | MDDQQITEKA TKEAKKMKKA VANRLVDHLP QEESPVSVFM AGSPGAGKTE TARAMIRAFA
NEHGQGLVHI ENDELRKEFE DYNGLNSPLF QRPATLLVEA IHDRALKRNV SFILDSTLSS
FDKAKDNIVR SIGHERYVLI IFVYQEPEQA WKLVKAREKV EGRRVPEAVF VEQFLESQRV
VSELKRHFKD KINITFIEKN IDGDNDNPHF NVTDIDALLR KKYNRQSLEA IVGLNPVT
|
|---|
| |