| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1679 |
|---|
| Symbol | |
|---|
| ID | 4252255 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 1983791 |
|---|
| End bp | 1986106 |
|---|
| Gene Length | 2316 bp |
|---|
| Protein Length | 771 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638118291 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_733812 |
|---|
| Protein GI | 113970019 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1033] Predicted exporters of the RND superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.980542 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.247829 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGAAA AACTGGTCAA CGGATTTGAG TCATTTTTAT TCCGCAACCG TGCTTGGGTG
GTGAGCATTT TTATTTTGCT GACGGTTTTT TTGGGATACC AAGCTAGCCA ATTAAAAATG
GATGCGGCAT TCATTAAAAA TATTCCGCTT AATCATAGCT ATATGCAAAC CTACCTCAAA
CACCAAAAAG ATTTTGGTGG GGCGAATAGC ATTATGGTGG CGGTGGAAGA TACCAGCGGC
AATATTTTTA ACCCTAATTT TTTCGACACA CTTAAAAATG TTCACGATCA GCTGTTTTTT
ATACCCGGTG TTGACCGCTC ACAGGTGAAA TCCTTATTTT CACCTTCGAC CCGTTTTACC
GAAGTCGTGG AAGATGGTTT CGCGGGCGGC CCTGTGATCC CCGCTGATTT TACGACCACC
GAAGCGGGTT TGAATACGGT GCGCGATAAC ATTGAAAAAG CAGGCATTGT GGGGCGCTTG
ATCGCCAACG ATTATAGTGC CGCTATGGTG TCGGCTCAGT TGATGGACTT TGATCCACAA
ACGGGTAAGC CCTTAGATAC CATCGCCTTT GCCGCTCAGC TGGAGAAGGA ACTTCGCGGT
AAGTATGAAA CCGATAAGGT GAAAATCCAT ATTATCGGTT TTGCTAAGAT GGCGGGTGAT
GTGGCCGATG GCGCCAAAGG CGTATTGCTG TTCTTCGTGA TTGCCATTTT GATCACTGCG
GTAATGGTCT ATCTGTTTTC AAAGTCACTT ATCCTGACCT TATTGCCATT AGTTTGTAGC
TTAACGGCGG TGATTTGGCA GCTGGGTTTA CTGACGGTCA TCGGTTTTGG CTTAGATCCT
ATGTCAATTC TGGTGCCGTT CCTCGTCTTT GCCATTGGAG TGAGTCACGG GGTGCAGATG
ATCAACGCGG TCAGACGCCG CGTGATGGAC GGACAAACCA CTAAGGCGGC TTCGGCTTCT
GCGTTTCGCA GTTTATTGGT GCCAGGTGGG GTAGCGCTGC TCTCTGATAC GGTTGGTTTT
ATCACACTGT TATCCATTGA TATTGGTATT ATTCGTGAGC TGGCCATTTC GGCCTCACTC
GGCGTGGGCG TGATTATTTT CACTAACCTT ATCCTCCTGC CTTTAGTCAT TTCTTTCACT
GAACTCAAGG TTGCGCCACA GGGTGCACCG ACCTCAGAGG AAGTCCGCGC CGAGGCAATT
TGGCGTTACC TTGCCAAATT TGCCACGCCT AAATACGCGA TAGTGGTGAT TGCGGCAACA
GTCATCTTGT ATTTTGCGGG TCTGCAACAG GCGAATCAGA TGAAAATTGG TGATCTGCAG
GGCGGGGCGC CAGCTTTACA CCAAGATTCA CGCTACAACC TGGACACCTT TTTTATTACG
GACCACTTTT CTATCACCAC GGATGTGATG ACTGTGATTG TGGAAGCGAG CCCTGAGGCT
TGTACTTACC ACGATATGCT GACGCAAATT GATGAGTTTG AATGGTTAGT ACGTAATACC
CCTGGCGTTG AATCGACGGT TAGCTTGGCC TCAGTGGCCA AAAAAGTGAA CGCGGGCTTT
AACGAAGGCA ATCCAAGATG GGAAGTGTTG CCGCGCACAA CCGCAAGTTT AGTGCAGGCC
ATCGGCCAAA TTCCAACCAC CTCTGGTTTG TTGAATGGTG ATTGTTCTGT GATGCCTGTG
TATCTGTTTA TGAAAGATCA CAAGGCAGAA ACCATAGAGA CTGTGGTCGC TAAGGTGAAA
GCGGTCGCGG CCAAAATGGA TAATGACAAG CTGCAATTTA AGCTGGCGTC TGGCCCTGTT
GGGGTGATGG CGGCAACCAA CGAAGCGGTA GCTGAAGCCC AGTTGCCTAT GATGATTTAT
GTGTATGGCG CGGTATTTGT GCTTTGCCTT ATCAGCTTTA AGTCATTAAA AGCGACAGTC
GCGGTGATTA TTCCGCTCTA TGTGGTCTCT ACACTAGCAC AGGCGCTGAT GACTCAACTT
AATATTGGCT TAGCAGTCAG TACCTTACCC GTTATTGCCC TAGGGGTAGG TATTGGGGTT
GACTATGGTA TTTATATCCT ATCGACCATG TCGGCTAAGC TTTCGAATGG TATGCCAGTA
CAGCAAGCTT ATTATGAAGC ATTAGTCGAG CGGGGCAGTG CGGTGATTTT CACTGGTTTG
ACCCTGGCGA TTGGTGTGAG CACTTGGTTT TTCTCTGCGC TCAAGTTCCA AATGGACATG
GGAATTCTGC TCACCTTCAT GTTTGTGGTA AATATGTTGG GCGCCATAAT TATCCTGCCA
GCACTGGCAG CGGTATTCTG GCGGCAGGCT AAGTAG
|
|---|
| Protein sequence | MLEKLVNGFE SFLFRNRAWV VSIFILLTVF LGYQASQLKM DAAFIKNIPL NHSYMQTYLK
HQKDFGGANS IMVAVEDTSG NIFNPNFFDT LKNVHDQLFF IPGVDRSQVK SLFSPSTRFT
EVVEDGFAGG PVIPADFTTT EAGLNTVRDN IEKAGIVGRL IANDYSAAMV SAQLMDFDPQ
TGKPLDTIAF AAQLEKELRG KYETDKVKIH IIGFAKMAGD VADGAKGVLL FFVIAILITA
VMVYLFSKSL ILTLLPLVCS LTAVIWQLGL LTVIGFGLDP MSILVPFLVF AIGVSHGVQM
INAVRRRVMD GQTTKAASAS AFRSLLVPGG VALLSDTVGF ITLLSIDIGI IRELAISASL
GVGVIIFTNL ILLPLVISFT ELKVAPQGAP TSEEVRAEAI WRYLAKFATP KYAIVVIAAT
VILYFAGLQQ ANQMKIGDLQ GGAPALHQDS RYNLDTFFIT DHFSITTDVM TVIVEASPEA
CTYHDMLTQI DEFEWLVRNT PGVESTVSLA SVAKKVNAGF NEGNPRWEVL PRTTASLVQA
IGQIPTTSGL LNGDCSVMPV YLFMKDHKAE TIETVVAKVK AVAAKMDNDK LQFKLASGPV
GVMAATNEAV AEAQLPMMIY VYGAVFVLCL ISFKSLKATV AVIIPLYVVS TLAQALMTQL
NIGLAVSTLP VIALGVGIGV DYGIYILSTM SAKLSNGMPV QQAYYEALVE RGSAVIFTGL
TLAIGVSTWF FSALKFQMDM GILLTFMFVV NMLGAIIILP ALAAVFWRQA K
|
|---|
| |