Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1673 |
Symbol | |
ID | 4252249 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 1973726 |
End bp | 1975777 |
Gene Length | 2052 bp |
Protein Length | 683 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638118285 |
Product | carboxy-terminal protease |
Protein accession | YP_733806 |
Protein GI | 113970013 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0793] Periplasmic protease |
TIGRFAM ID | [TIGR00225] C-terminal peptidase (prc) |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00274964 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGAAAAC TCACTTTGGC TACATCCATT GCCACTGTTT TTGTCGGATT CTCGGCTTGG GCTGTCCCCC CTACGATTCA AATCAGCGAG TTACCCACTC TCAAGCAGGA AGCGCAGCAT AAAGTGGCGA GTAAGCGAGT GACGGATTTA TACACTCGTT CCCACTATCA TAGATTTGCA TTAGATGATG CGTTTTCTGC TCAGATTTTT GACCGCTACC TGCAGCAACT CGACTACCGT CGTAATGTGC TGACGCAAGC CGATGTCGAC AGCTTCAAAC CTTATGTTAA TCAGTTTGAC GATATGCTGA GCTCGGGTGA ACTCGAGCCT GCTTATAAGA TGTTTGATTT GGTTCAGAAA CGTCGCTACG AAGGTTTTGT ATACGCACTC TCTCTGCTCG ACAAAGAGAT GGACTTTACC GTTCCGGGTG ATGCCTACGA ATACGATAGA GAAGATGTTG CATGGCCAAA AGATCAAGCC GAAATCAACG AATTATGGCG TCAACGTGTT AAATACGATG CGCTGAACCT GAAACTTACT GGCAAGAAAT GGCCTGAAAT CGTTGATATT CTGCAAAAAC GCTACAACAA CGCCATTAAA CGTCTGACTC AGACCAATAG CGAAGATGTG TTCCAAGCGG TGATGAATGC GTTCTCCCGT AGCATCGAGC CACACACTAG CTATTTATCG CCCCGTAATG CTGAACGTTT CCAAATGGAA ATGAACTTAA GCCTCGAGGG GATTGGTGCG CAGTTACAGC TCGAAGACGA TTACACTGTG ATTAAGAGTT TAATCGCGGG CGGTCCTGCG GCTAGTAGTG AAAAACTGTC GCCTGAAGAT AAGATCGTCG GCGTCGGTCA AGAAGGCGGT GAGATTGTTG ATGTAATCGG CTGGCGATTG GACGATGTGG TCGATCTGAT CAAAGGGCCT AAGGGCAGTA AAGTCGTTCT GCAGATTTTA CCTAAGAAGG GCGGCTCTAA CGCTAAGCCG TTTAATCTGA CCTTAGTGCG CGACAAAATT CGTTTAGAAG ACCGTGCCGC GACCTCAAAG ATCATCGAGC CAAAAGACGG TGAATACGCC AACCGTAAAG TGGGTGTGAT TCAAATTCCT GGTTTCTATA TGAACTTATC CCAGGACGTC GAAAAAGAAT TAGTGAAGTT AAACGAAGCC AAGGTTGAAG GCGTCGTCAT CGATTTACGT GGTAATGGCG GCGGTGCGTT GACCGAAGCC GTGTTACTGA CGGGACTCTT TATCGATATG GGCCCTGTGG TGCAAGTACG TGACGCCGAT GGTCGAGTGT CTGCCCACCG TGATAACGAT GGCAAGACGA CCTACGCTGG TCCGTTAACC ATTATGGTTG ACCGTTACAG TGCATCAGCT TCTGAAATTT TTGCCGCCGC GTTGCAAGAT TACGACCGTG CGCTGATTGT CGGTGAGTCA AGCTTTGGTA AAGGCACTGT GCAGCAGCAT AAGAGCCTTG GTCGAATCTA CGACATGTAC GAGAAGCCGA TTGGCCACGT GCAGTACACG ATTCAAAAGT TCTACCGTAT CAACGGTGGC AGCACTCAGC TCAAAGGCGT AACCCCGAAC ATTGCTTACC CAAGTGCGTT AGAGCCGGGT GAATACGGTG AAGCGGAAGA GAAGAATGCT TTACCTTGGG ATAAAGTGCC GATGGCGCAA TACGGCACCC TAAACGATAT CACCCCTGAG TTGGTGGCGA GTTTAGATAA AAAGCACCTT GCCCGTATTC AGAACAATGT CGAGTTTAAC TATATCAATC AAGATATTGC CGACTTTAAA AAGCATCATA AAGAGAAAAC AGTCTCCTTA GTTGAAAGTG AGCGCATTGC CTCACGTGAA GCCGATGAGA AGAAAGTCCT CGATAGAACC AACGAGCGTC GTGTTGCCCA TGGTTTAGCC GCGGTTAAAT CGATGGAAGA CATTAAAGAC AAAGACGACA TTGAAGCACC GGATGCCTTC TTAGACGAAA CGGCCTATAT CACCTTAGAT ATGGCGGATG CAAAAAAGCT GGCTAACGCT GGCACTAAAT AG
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Protein sequence | MRKLTLATSI ATVFVGFSAW AVPPTIQISE LPTLKQEAQH KVASKRVTDL YTRSHYHRFA LDDAFSAQIF DRYLQQLDYR RNVLTQADVD SFKPYVNQFD DMLSSGELEP AYKMFDLVQK RRYEGFVYAL SLLDKEMDFT VPGDAYEYDR EDVAWPKDQA EINELWRQRV KYDALNLKLT GKKWPEIVDI LQKRYNNAIK RLTQTNSEDV FQAVMNAFSR SIEPHTSYLS PRNAERFQME MNLSLEGIGA QLQLEDDYTV IKSLIAGGPA ASSEKLSPED KIVGVGQEGG EIVDVIGWRL DDVVDLIKGP KGSKVVLQIL PKKGGSNAKP FNLTLVRDKI RLEDRAATSK IIEPKDGEYA NRKVGVIQIP GFYMNLSQDV EKELVKLNEA KVEGVVIDLR GNGGGALTEA VLLTGLFIDM GPVVQVRDAD GRVSAHRDND GKTTYAGPLT IMVDRYSASA SEIFAAALQD YDRALIVGES SFGKGTVQQH KSLGRIYDMY EKPIGHVQYT IQKFYRINGG STQLKGVTPN IAYPSALEPG EYGEAEEKNA LPWDKVPMAQ YGTLNDITPE LVASLDKKHL ARIQNNVEFN YINQDIADFK KHHKEKTVSL VESERIASRE ADEKKVLDRT NERRVAHGLA AVKSMEDIKD KDDIEAPDAF LDETAYITLD MADAKKLANA GTK
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