Gene Shewmr4_1673 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1673 
Symbol 
ID4252249 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1973726 
End bp1975777 
Gene Length2052 bp 
Protein Length683 aa 
Translation table11 
GC content48% 
IMG OID638118285 
Productcarboxy-terminal protease 
Protein accessionYP_733806 
Protein GI113970013 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0793] Periplasmic protease 
TIGRFAM ID[TIGR00225] C-terminal peptidase (prc) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00274964 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGAAAAC TCACTTTGGC TACATCCATT GCCACTGTTT TTGTCGGATT CTCGGCTTGG 
GCTGTCCCCC CTACGATTCA AATCAGCGAG TTACCCACTC TCAAGCAGGA AGCGCAGCAT
AAAGTGGCGA GTAAGCGAGT GACGGATTTA TACACTCGTT CCCACTATCA TAGATTTGCA
TTAGATGATG CGTTTTCTGC TCAGATTTTT GACCGCTACC TGCAGCAACT CGACTACCGT
CGTAATGTGC TGACGCAAGC CGATGTCGAC AGCTTCAAAC CTTATGTTAA TCAGTTTGAC
GATATGCTGA GCTCGGGTGA ACTCGAGCCT GCTTATAAGA TGTTTGATTT GGTTCAGAAA
CGTCGCTACG AAGGTTTTGT ATACGCACTC TCTCTGCTCG ACAAAGAGAT GGACTTTACC
GTTCCGGGTG ATGCCTACGA ATACGATAGA GAAGATGTTG CATGGCCAAA AGATCAAGCC
GAAATCAACG AATTATGGCG TCAACGTGTT AAATACGATG CGCTGAACCT GAAACTTACT
GGCAAGAAAT GGCCTGAAAT CGTTGATATT CTGCAAAAAC GCTACAACAA CGCCATTAAA
CGTCTGACTC AGACCAATAG CGAAGATGTG TTCCAAGCGG TGATGAATGC GTTCTCCCGT
AGCATCGAGC CACACACTAG CTATTTATCG CCCCGTAATG CTGAACGTTT CCAAATGGAA
ATGAACTTAA GCCTCGAGGG GATTGGTGCG CAGTTACAGC TCGAAGACGA TTACACTGTG
ATTAAGAGTT TAATCGCGGG CGGTCCTGCG GCTAGTAGTG AAAAACTGTC GCCTGAAGAT
AAGATCGTCG GCGTCGGTCA AGAAGGCGGT GAGATTGTTG ATGTAATCGG CTGGCGATTG
GACGATGTGG TCGATCTGAT CAAAGGGCCT AAGGGCAGTA AAGTCGTTCT GCAGATTTTA
CCTAAGAAGG GCGGCTCTAA CGCTAAGCCG TTTAATCTGA CCTTAGTGCG CGACAAAATT
CGTTTAGAAG ACCGTGCCGC GACCTCAAAG ATCATCGAGC CAAAAGACGG TGAATACGCC
AACCGTAAAG TGGGTGTGAT TCAAATTCCT GGTTTCTATA TGAACTTATC CCAGGACGTC
GAAAAAGAAT TAGTGAAGTT AAACGAAGCC AAGGTTGAAG GCGTCGTCAT CGATTTACGT
GGTAATGGCG GCGGTGCGTT GACCGAAGCC GTGTTACTGA CGGGACTCTT TATCGATATG
GGCCCTGTGG TGCAAGTACG TGACGCCGAT GGTCGAGTGT CTGCCCACCG TGATAACGAT
GGCAAGACGA CCTACGCTGG TCCGTTAACC ATTATGGTTG ACCGTTACAG TGCATCAGCT
TCTGAAATTT TTGCCGCCGC GTTGCAAGAT TACGACCGTG CGCTGATTGT CGGTGAGTCA
AGCTTTGGTA AAGGCACTGT GCAGCAGCAT AAGAGCCTTG GTCGAATCTA CGACATGTAC
GAGAAGCCGA TTGGCCACGT GCAGTACACG ATTCAAAAGT TCTACCGTAT CAACGGTGGC
AGCACTCAGC TCAAAGGCGT AACCCCGAAC ATTGCTTACC CAAGTGCGTT AGAGCCGGGT
GAATACGGTG AAGCGGAAGA GAAGAATGCT TTACCTTGGG ATAAAGTGCC GATGGCGCAA
TACGGCACCC TAAACGATAT CACCCCTGAG TTGGTGGCGA GTTTAGATAA AAAGCACCTT
GCCCGTATTC AGAACAATGT CGAGTTTAAC TATATCAATC AAGATATTGC CGACTTTAAA
AAGCATCATA AAGAGAAAAC AGTCTCCTTA GTTGAAAGTG AGCGCATTGC CTCACGTGAA
GCCGATGAGA AGAAAGTCCT CGATAGAACC AACGAGCGTC GTGTTGCCCA TGGTTTAGCC
GCGGTTAAAT CGATGGAAGA CATTAAAGAC AAAGACGACA TTGAAGCACC GGATGCCTTC
TTAGACGAAA CGGCCTATAT CACCTTAGAT ATGGCGGATG CAAAAAAGCT GGCTAACGCT
GGCACTAAAT AG
 
Protein sequence
MRKLTLATSI ATVFVGFSAW AVPPTIQISE LPTLKQEAQH KVASKRVTDL YTRSHYHRFA 
LDDAFSAQIF DRYLQQLDYR RNVLTQADVD SFKPYVNQFD DMLSSGELEP AYKMFDLVQK
RRYEGFVYAL SLLDKEMDFT VPGDAYEYDR EDVAWPKDQA EINELWRQRV KYDALNLKLT
GKKWPEIVDI LQKRYNNAIK RLTQTNSEDV FQAVMNAFSR SIEPHTSYLS PRNAERFQME
MNLSLEGIGA QLQLEDDYTV IKSLIAGGPA ASSEKLSPED KIVGVGQEGG EIVDVIGWRL
DDVVDLIKGP KGSKVVLQIL PKKGGSNAKP FNLTLVRDKI RLEDRAATSK IIEPKDGEYA
NRKVGVIQIP GFYMNLSQDV EKELVKLNEA KVEGVVIDLR GNGGGALTEA VLLTGLFIDM
GPVVQVRDAD GRVSAHRDND GKTTYAGPLT IMVDRYSASA SEIFAAALQD YDRALIVGES
SFGKGTVQQH KSLGRIYDMY EKPIGHVQYT IQKFYRINGG STQLKGVTPN IAYPSALEPG
EYGEAEEKNA LPWDKVPMAQ YGTLNDITPE LVASLDKKHL ARIQNNVEFN YINQDIADFK
KHHKEKTVSL VESERIASRE ADEKKVLDRT NERRVAHGLA AVKSMEDIKD KDDIEAPDAF
LDETAYITLD MADAKKLANA GTK