| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1665 |
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| Symbol | yebU |
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| ID | 4252241 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 1964923 |
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| End bp | 1966452 |
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| Gene Length | 1530 bp |
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| Protein Length | 509 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638118277 |
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| Product | rRNA (cytosine-C(5)-)-methyltransferase RsmF |
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| Protein accession | YP_733798 |
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| Protein GI | 113970005 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
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| TIGRFAM ID | [TIGR00446] NOL1/NOP2/sun family putative RNA methylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAAAG CCAAGGGAGA AAATCCCAGC CTAGTAAGGG ATTATGATAT ACTTGCCGCA
GTTGATACAC AGCCTAATCC CGTTATGGTT CAATTAAATC AAAATTTTAT CAATACTATT
GCCCAAGAAC TGCCCGCCCA TCTCTCAATG GATGACTTTA TCGCGGCCTG TTCAAGACCA
CTACGCCGCT CGATTCGCGT CAACACCTTA AAGATCAGCA GTGAAGATTT TAAGCAGTTA
ATGCAGCCTA AGGGATGGAC CTTTGATCCC ATTCCCTGGT GTGAGGATGG TTTCTGGATA
AGCTACGATG AAGAAGAGCA GCTCGGCAAC GCCCTAGAGC ATATTCAGGG ATTGTTCTAT
ATCCAAGAAG CCAGCTCCAT GTTGCCCCCC ACAGCGCTAT TTACCCCGAA TGCGGATTGG
CAATGTGTAT TAGATTTAGC CTCGGCGCCT GGCTCTAAAA CCACGCAAAT GGCAGCGTTA
ATGAATAATC AAGGCTTATT GGTCGCCAAT GAATATTCCG CTAGCCGCGT CAAAGTACTC
CATGCCAATG TGCTACGCAT GGGCGCGAGT CACTGCGCGC TGACCCACTT CGATGGACGG
GTATTTGGCG AGTACCTGTA TGAAAGTTTT GATGCGGTGT TGATTGACGC CCCCTGCGGT
GGTGAAGGCA TAGTCCGTAA AGATGCGGAC GCGTTAAAAT CTTGGTCCCT CGATGAGGTG
CTCGAAATTA GCGAAACCCA AAAAGCGTTA ATCGAATCTG CATTTTTGGC GTTAAAACCG
GGTGGCAGTT TGGTGTATTC CACTTGCACC CTTAATCGGC ACGAAAACCA AGGCGTGTGC
GAATATTTAC AGCAAACCTA TGGCGATGCG GTGCAATTTG AATCCTTAAA CCAACTGTTT
GATGGCGCCG AAAAAGCCAC TACGCCAGAA GGCTTTTTGC ACGTTTGGCC GCAAATTTAC
GACAGTGAAG GCTTTTTTGT AGCTAAGCTG ACTAAAACCC GCTCTGTGCC GCGCCTGCAA
CCTGAGCCTA AATTGCAAAA GAATTTCCCC TTTACGGAGG CAAGTGCCAA ACAAGCCAAA
GCCATTCAAG CCTATTTTGC CGATGATTTG GGTATCGAAC TGCCCGATGA TCTCATTATG
GTGCGCGACG ATGAGTTTTG GCTCTTTCCC CATGAGTTTA GAGATTTTAT TGGCAAAATG
CGCTTTCAGC GGATTGGGGT TAAGCTTGCC GACCACAGTA AACATGGCTT TAAAGTCCGT
CATGAAGCCA TTATTGCGCT TGCGGGAAAA GCACTTACTG CGGCGACAAA CGGCGCTAAA
GTTGTCGACG TTAGCGATGA GCAAGCTAAA GAGTATTTGA TGGGACGAGA TATTCCCCTC
GATACGGCTG GCAAGGCTCA AGGTGAAGTG ATTGTCTGTT ATGGCGGCGC GCCCTTAGGC
ATGGCTAAAC ATTTAGGCAA TAAATTAAAA AACAGCCTGC CCAGAGACTT AGTAAAAGAT
AAAGTGTTAT TGCTACCACC ACAGGCATAA
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| Protein sequence | MAKAKGENPS LVRDYDILAA VDTQPNPVMV QLNQNFINTI AQELPAHLSM DDFIAACSRP
LRRSIRVNTL KISSEDFKQL MQPKGWTFDP IPWCEDGFWI SYDEEEQLGN ALEHIQGLFY
IQEASSMLPP TALFTPNADW QCVLDLASAP GSKTTQMAAL MNNQGLLVAN EYSASRVKVL
HANVLRMGAS HCALTHFDGR VFGEYLYESF DAVLIDAPCG GEGIVRKDAD ALKSWSLDEV
LEISETQKAL IESAFLALKP GGSLVYSTCT LNRHENQGVC EYLQQTYGDA VQFESLNQLF
DGAEKATTPE GFLHVWPQIY DSEGFFVAKL TKTRSVPRLQ PEPKLQKNFP FTEASAKQAK
AIQAYFADDL GIELPDDLIM VRDDEFWLFP HEFRDFIGKM RFQRIGVKLA DHSKHGFKVR
HEAIIALAGK ALTAATNGAK VVDVSDEQAK EYLMGRDIPL DTAGKAQGEV IVCYGGAPLG
MAKHLGNKLK NSLPRDLVKD KVLLLPPQA
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