Gene Shewmr4_1652 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1652 
Symbol 
ID4252228 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1952631 
End bp1953101 
Gene Length471 bp 
Protein Length156 aa 
Translation table11 
GC content50% 
IMG OID638118264 
Product17 kDa surface antigen 
Protein accessionYP_733785 
Protein GI113969992 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3133] Outer membrane lipoprotein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000000172178 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTGGAAAC CTACACTAGC GAGCTTTATG TTTATTTGTG CTTTAGTGAT TTCTCCCGTG 
CATGCAGGCT ACGATCGTAA CCAGGCTGTG CCAGTCGAAA AAGTCCTCTA TGGCGATATT
AGCTCTGTGC GTAATATCAC CGAAACCCAA TTGATTGAAG ACAGAAACCA AGGTTGGAAA
ACCTTTGGTG GCGCCTTAGC AGGCGGGGTG ATTGGCCATC AATTTGGCGG CGGCTCAGGC
CAAGATATTG CGACAGTGTT GGGAGCGTTA ATTGGCGCTG GGGTTGGCAA TCGTTATGGC
AGTGGCACCA CGGTACAATC ACTCAAGCTA GTGGAGCTGA TGATCACTCA GGAAGATGGC
ACGCAAGTCA TGGTGATCCA AGATTATGAT CCCGGCATGG TATTCAATGC GGGGGATAGG
GTACGTGTGG TGTACCTGCA AGGTGGGGTT CGCGTTGATT TAGCCATGTG A
 
Protein sequence
MWKPTLASFM FICALVISPV HAGYDRNQAV PVEKVLYGDI SSVRNITETQ LIEDRNQGWK 
TFGGALAGGV IGHQFGGGSG QDIATVLGAL IGAGVGNRYG SGTTVQSLKL VELMITQEDG
TQVMVIQDYD PGMVFNAGDR VRVVYLQGGV RVDLAM